Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.48■□□□□ 0.55
TNFSF9P41273 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TNFSF9P41273 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
TNFSF9P41273 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
TNFSF9P41273 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC18.48■□□□□ 0.55
TNFSF9P41273 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
TNFSF9P41273 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TNFSF9P41273 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
TNFSF9P41273 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
TNFSF9P41273 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TNFSF9P41273 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.47■□□□□ 0.55
TNFSF9P41273 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TNFSF9P41273 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.47■□□□□ 0.55
TNFSF9P41273 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.47■□□□□ 0.55
TNFSF9P41273 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TNFSF9P41273 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
TNFSF9P41273 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
TNFSF9P41273 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.47■□□□□ 0.55
TNFSF9P41273 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TNFSF9P41273 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.47■□□□□ 0.55
TNFSF9P41273 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18.47■□□□□ 0.55
TNFSF9P41273 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TNFSF9P41273 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC18.47■□□□□ 0.55
TNFSF9P41273 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TNFSF9P41273 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.47■□□□□ 0.55
TNFSF9P41273 FAM185BP-201ENST00000443595 716 ntBASIC18.47■□□□□ 0.55
TNFSF9P41273 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
TNFSF9P41273 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TNFSF9P41273 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
TNFSF9P41273 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TNFSF9P41273 AC096734.2-201ENST00000562054 433 ntBASIC18.47■□□□□ 0.55
TNFSF9P41273 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.47■□□□□ 0.55
TNFSF9P41273 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TNFSF9P41273 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.47■□□□□ 0.55
TNFSF9P41273 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.47■□□□□ 0.55
TNFSF9P41273 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.47■□□□□ 0.55
TNFSF9P41273 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.47■□□□□ 0.55
TNFSF9P41273 AC004877.2-201ENST00000623941 599 ntBASIC18.47■□□□□ 0.55
TNFSF9P41273 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.47■□□□□ 0.55
TNFSF9P41273 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
TNFSF9P41273 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
TNFSF9P41273 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TNFSF9P41273 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
TNFSF9P41273 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TNFSF9P41273 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TNFSF9P41273 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TNFSF9P41273 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC18.47■□□□□ 0.55
TNFSF9P41273 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TNFSF9P41273 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TNFSF9P41273 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TNFSF9P41273 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC18.46■□□□□ 0.55
TNFSF9P41273 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TNFSF9P41273 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TNFSF9P41273 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
TNFSF9P41273 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
TNFSF9P41273 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TNFSF9P41273 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TNFSF9P41273 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC18.46■□□□□ 0.55
TNFSF9P41273 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
TNFSF9P41273 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
TNFSF9P41273 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TNFSF9P41273 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TNFSF9P41273 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC18.46■□□□□ 0.55
TNFSF9P41273 RHOQP3-201ENST00000437982 621 ntBASIC18.46■□□□□ 0.55
TNFSF9P41273 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.46■□□□□ 0.55
TNFSF9P41273 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TNFSF9P41273 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.46■□□□□ 0.55
TNFSF9P41273 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
TNFSF9P41273 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.46■□□□□ 0.55
TNFSF9P41273 AC040169.1-201ENST00000565382 521 ntBASIC18.46■□□□□ 0.55
TNFSF9P41273 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.46■□□□□ 0.55
TNFSF9P41273 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.46■□□□□ 0.55
TNFSF9P41273 AC023511.2-201ENST00000618803 211 ntBASIC18.46■□□□□ 0.55
TNFSF9P41273 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.46■□□□□ 0.55
TNFSF9P41273 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TNFSF9P41273 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC18.46■□□□□ 0.55
TNFSF9P41273 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TNFSF9P41273 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TNFSF9P41273 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.46■□□□□ 0.55
TNFSF9P41273 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TNFSF9P41273 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
TNFSF9P41273 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
TNFSF9P41273 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
TNFSF9P41273 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
TNFSF9P41273 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TNFSF9P41273 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TNFSF9P41273 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TNFSF9P41273 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TNFSF9P41273 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
TNFSF9P41273 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
TNFSF9P41273 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TNFSF9P41273 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.45■□□□□ 0.54
TNFSF9P41273 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TNFSF9P41273 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TNFSF9P41273 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TNFSF9P41273 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC18.45■□□□□ 0.54
TNFSF9P41273 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC18.45■□□□□ 0.54
TNFSF9P41273 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.45■□□□□ 0.54
TNFSF9P41273 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.45■□□□□ 0.54
TNFSF9P41273 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms