Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.65■□□□□ 0.26
HNF4AP41235 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.65■□□□□ 0.26
HNF4AP41235 MTDHP3-201ENST00000594186 672 ntBASIC16.65■□□□□ 0.26
HNF4AP41235 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HNF4AP41235 IRF5-214ENST00000613821 595 ntTSL 5 BASIC16.65■□□□□ 0.26
HNF4AP41235 AC073592.4-201ENST00000623827 446 ntBASIC16.65■□□□□ 0.26
HNF4AP41235 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.65■□□□□ 0.26
HNF4AP41235 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
HNF4AP41235 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
HNF4AP41235 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
HNF4AP41235 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HNF4AP41235 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
HNF4AP41235 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.65■□□□□ 0.26
HNF4AP41235 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
HNF4AP41235 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.65■□□□□ 0.26
HNF4AP41235 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
HNF4AP41235 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HNF4AP41235 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HNF4AP41235 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
HNF4AP41235 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HNF4AP41235 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HNF4AP41235 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HNF4AP41235 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HNF4AP41235 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HNF4AP41235 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.64■□□□□ 0.25
HNF4AP41235 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HNF4AP41235 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HNF4AP41235 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
HNF4AP41235 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HNF4AP41235 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HNF4AP41235 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.64■□□□□ 0.25
HNF4AP41235 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
HNF4AP41235 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
HNF4AP41235 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.64■□□□□ 0.25
HNF4AP41235 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
HNF4AP41235 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HNF4AP41235 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
HNF4AP41235 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HNF4AP41235 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HNF4AP41235 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HNF4AP41235 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HNF4AP41235 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.64■□□□□ 0.25
HNF4AP41235 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.64■□□□□ 0.25
HNF4AP41235 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.64■□□□□ 0.25
HNF4AP41235 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HNF4AP41235 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HNF4AP41235 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
HNF4AP41235 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HNF4AP41235 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.63■□□□□ 0.25
HNF4AP41235 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
HNF4AP41235 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
HNF4AP41235 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
HNF4AP41235 AC148477.5-201ENST00000625164 1645 ntBASIC16.63■□□□□ 0.25
HNF4AP41235 AC079776.2-201ENST00000641154 1609 ntBASIC16.63■□□□□ 0.25
HNF4AP41235 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
HNF4AP41235 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
HNF4AP41235 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 GPR89P-201ENST00000407924 1495 ntBASIC16.63■□□□□ 0.25
HNF4AP41235 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.63■□□□□ 0.25
HNF4AP41235 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.63■□□□□ 0.25
HNF4AP41235 AKR1C7P-201ENST00000305623 895 ntBASIC16.63■□□□□ 0.25
HNF4AP41235 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.63■□□□□ 0.25
HNF4AP41235 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 AL450487.1-201ENST00000426799 995 ntBASIC16.63■□□□□ 0.25
HNF4AP41235 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.63■□□□□ 0.25
HNF4AP41235 EMBP1-201ENST00000458200 901 ntBASIC16.63■□□□□ 0.25
HNF4AP41235 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.63■□□□□ 0.25
HNF4AP41235 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.63■□□□□ 0.25
HNF4AP41235 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
HNF4AP41235 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
HNF4AP41235 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms