Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC044860.1-202ENST00000559481 777 ntBASIC19.93■□□□□ 0.78
SCN4AP35499 IGHV3OR16-16-201ENST00000563644 343 ntBASIC19.93■□□□□ 0.78
SCN4AP35499 CTBP2P3-201ENST00000585629 1255 ntBASIC19.93■□□□□ 0.78
SCN4AP35499 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SCN4AP35499 HLA-DQB1-201ENST00000374943 1656 ntBASIC19.93■□□□□ 0.78
SCN4AP35499 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SCN4AP35499 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SCN4AP35499 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SCN4AP35499 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SCN4AP35499 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SCN4AP35499 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.93■□□□□ 0.78
SCN4AP35499 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SCN4AP35499 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC19.93■□□□□ 0.78
SCN4AP35499 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SCN4AP35499 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.93■□□□□ 0.78
SCN4AP35499 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.93■□□□□ 0.78
SCN4AP35499 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC19.92■□□□□ 0.78
SCN4AP35499 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN4AP35499 AC098850.1-201ENST00000419919 790 ntBASIC19.92■□□□□ 0.78
SCN4AP35499 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC19.92■□□□□ 0.78
SCN4AP35499 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SCN4AP35499 AC023310.3-201ENST00000557027 670 ntBASIC19.92■□□□□ 0.78
SCN4AP35499 AC100756.1-201ENST00000562736 682 ntBASIC19.92■□□□□ 0.78
SCN4AP35499 AC138749.3-201ENST00000567691 622 ntBASIC19.92■□□□□ 0.78
SCN4AP35499 AC015936.2-201ENST00000593177 259 ntBASIC19.92■□□□□ 0.78
SCN4AP35499 AC116165.1-201ENST00000611806 668 ntBASIC19.92■□□□□ 0.78
SCN4AP35499 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN4AP35499 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC19.92■□□□□ 0.78
SCN4AP35499 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.92■□□□□ 0.78
SCN4AP35499 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
SCN4AP35499 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN4AP35499 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
SCN4AP35499 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SCN4AP35499 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN4AP35499 TOP3BP1-201ENST00000420768 1380 ntBASIC19.92■□□□□ 0.78
SCN4AP35499 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN4AP35499 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN4AP35499 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC19.92■□□□□ 0.78
SCN4AP35499 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN4AP35499 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN4AP35499 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SCN4AP35499 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
SCN4AP35499 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC19.92■□□□□ 0.78
SCN4AP35499 MFF-223ENST00000524634 647 ntTSL 2 BASIC19.92■□□□□ 0.78
SCN4AP35499 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC19.92■□□□□ 0.78
SCN4AP35499 USB1-203ENST00000539737 1212 ntTSL 2 BASIC19.92■□□□□ 0.78
SCN4AP35499 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC19.92■□□□□ 0.78
SCN4AP35499 FLJ13224-201ENST00000313737 1514 ntBASIC19.92■□□□□ 0.78
SCN4AP35499 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN4AP35499 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC19.92■□□□□ 0.78
SCN4AP35499 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SCN4AP35499 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SCN4AP35499 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
SCN4AP35499 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SCN4AP35499 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC19.91■□□□□ 0.78
SCN4AP35499 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SCN4AP35499 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SCN4AP35499 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SCN4AP35499 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SCN4AP35499 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SCN4AP35499 NME6-203ENST00000415644 849 ntTSL 2 BASIC19.91■□□□□ 0.78
SCN4AP35499 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC19.91■□□□□ 0.78
SCN4AP35499 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC19.91■□□□□ 0.78
SCN4AP35499 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC19.91■□□□□ 0.78
SCN4AP35499 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC19.91■□□□□ 0.78
SCN4AP35499 AC123567.1-201ENST00000548294 1261 ntBASIC19.91■□□□□ 0.78
SCN4AP35499 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
SCN4AP35499 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC19.91■□□□□ 0.78
SCN4AP35499 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SCN4AP35499 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.91■□□□□ 0.78
SCN4AP35499 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SCN4AP35499 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SCN4AP35499 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SCN4AP35499 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SCN4AP35499 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SCN4AP35499 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC19.91■□□□□ 0.78
SCN4AP35499 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC19.9■□□□□ 0.78
SCN4AP35499 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC19.9■□□□□ 0.78
SCN4AP35499 BOLA2P3-201ENST00000404566 256 ntBASIC19.9■□□□□ 0.78
SCN4AP35499 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
SCN4AP35499 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC19.9■□□□□ 0.78
SCN4AP35499 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC19.9■□□□□ 0.78
SCN4AP35499 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC19.9■□□□□ 0.78
SCN4AP35499 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SCN4AP35499 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCN4AP35499 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC19.9■□□□□ 0.78
SCN4AP35499 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCN4AP35499 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SCN4AP35499 SLC9A3P2-201ENST00000447821 2021 ntBASIC19.9■□□□□ 0.78
SCN4AP35499 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SCN4AP35499 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.9■□□□□ 0.78
SCN4AP35499 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCN4AP35499 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
SCN4AP35499 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC19.9■□□□□ 0.78
SCN4AP35499 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC19.9■□□□□ 0.78
SCN4AP35499 MYCLP2-201ENST00000449268 967 ntBASIC19.9■□□□□ 0.78
SCN4AP35499 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC19.9■□□□□ 0.78
SCN4AP35499 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC19.9■□□□□ 0.78
SCN4AP35499 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC19.9■□□□□ 0.78
SCN4AP35499 WNT11-204ENST00000621122 789 ntTSL 5 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms