Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.07■□□□□ 0.32
MSH3P20585 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.07■□□□□ 0.32
MSH3P20585 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.07■□□□□ 0.32
MSH3P20585 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 AL031284.1-201ENST00000419297 478 ntBASIC17.07■□□□□ 0.32
MSH3P20585 HNRNPDP1-201ENST00000439535 754 ntBASIC17.07■□□□□ 0.32
MSH3P20585 AC093909.1-201ENST00000504731 1122 ntBASIC17.07■□□□□ 0.32
MSH3P20585 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.07■□□□□ 0.32
MSH3P20585 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
MSH3P20585 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.07■□□□□ 0.32
MSH3P20585 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.07■□□□□ 0.32
MSH3P20585 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.07■□□□□ 0.32
MSH3P20585 AL353135.1-201ENST00000606729 504 ntBASIC17.07■□□□□ 0.32
MSH3P20585 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.07■□□□□ 0.32
MSH3P20585 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 AC004706.3-202ENST00000621574 984 ntBASIC17.07■□□□□ 0.32
MSH3P20585 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.07■□□□□ 0.32
MSH3P20585 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.07■□□□□ 0.32
MSH3P20585 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.07■□□□□ 0.32
MSH3P20585 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
MSH3P20585 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
MSH3P20585 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
MSH3P20585 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
MSH3P20585 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.07■□□□□ 0.32
MSH3P20585 AD000864.1-201ENST00000624076 2295 ntBASIC17.07■□□□□ 0.32
MSH3P20585 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
MSH3P20585 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
MSH3P20585 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH3P20585 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MSH3P20585 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
MSH3P20585 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH3P20585 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
MSH3P20585 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
MSH3P20585 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH3P20585 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH3P20585 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.06■□□□□ 0.32
MSH3P20585 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
MSH3P20585 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.06■□□□□ 0.32
MSH3P20585 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.06■□□□□ 0.32
MSH3P20585 AC026396.1-201ENST00000419388 421 ntBASIC17.06■□□□□ 0.32
MSH3P20585 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MSH3P20585 AP001005.1-201ENST00000571755 1248 ntBASIC17.06■□□□□ 0.32
MSH3P20585 SLC25A6P4-201ENST00000586535 553 ntBASIC17.06■□□□□ 0.32
MSH3P20585 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.06■□□□□ 0.32
MSH3P20585 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
MSH3P20585 FAM215A-202ENST00000632077 792 ntBASIC17.06■□□□□ 0.32
MSH3P20585 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.06■□□□□ 0.32
MSH3P20585 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH3P20585 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH3P20585 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH3P20585 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.06■□□□□ 0.32
MSH3P20585 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH3P20585 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
MSH3P20585 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
MSH3P20585 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.06■□□□□ 0.32
MSH3P20585 AC099398.1-201ENST00000567919 2776 ntBASIC17.06■□□□□ 0.32
MSH3P20585 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.05■□□□□ 0.32
MSH3P20585 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSH3P20585 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSH3P20585 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.05■□□□□ 0.32
MSH3P20585 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MSH3P20585 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSH3P20585 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.05■□□□□ 0.32
MSH3P20585 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.05■□□□□ 0.32
MSH3P20585 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.05■□□□□ 0.32
MSH3P20585 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MSH3P20585 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MSH3P20585 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSH3P20585 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.05■□□□□ 0.32
MSH3P20585 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.05■□□□□ 0.32
MSH3P20585 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSH3P20585 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSH3P20585 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
MSH3P20585 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
MSH3P20585 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.05■□□□□ 0.32
MSH3P20585 AC008735.5-201ENST00000623544 497 ntBASIC17.05■□□□□ 0.32
MSH3P20585 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.05■□□□□ 0.32
MSH3P20585 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSH3P20585 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
MSH3P20585 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.05■□□□□ 0.32
MSH3P20585 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
MSH3P20585 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms