Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 AC091390.4-202ENST00000476426 537 ntBASIC12.93□□□□□ -0.34
HLA-DQA1P01909 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 RN7SL471P-201ENST00000580476 299 ntBASIC12.93□□□□□ -0.34
HLA-DQA1P01909 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 AC110285.5-201ENST00000611501 352 ntBASIC12.93□□□□□ -0.34
HLA-DQA1P01909 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 AL445675.2-201ENST00000620291 557 ntBASIC12.93□□□□□ -0.34
HLA-DQA1P01909 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 KRT8P7-201ENST00000533003 1432 ntBASIC12.93□□□□□ -0.34
HLA-DQA1P01909 HOXB1-202ENST00000577092 1414 ntBASIC12.93□□□□□ -0.34
HLA-DQA1P01909 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC12.93□□□□□ -0.34
HLA-DQA1P01909 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 MIR3180-5-201ENST00000583743 153 ntBASIC12.92□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms