Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
USH2AO75445 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
USH2AO75445 LOX-206ENST00000639739 1626 ntTSL 5 BASIC7.54□□□□□ -1.2
USH2AO75445 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
USH2AO75445 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
USH2AO75445 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
USH2AO75445 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
USH2AO75445 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC7.54□□□□□ -1.2
USH2AO75445 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC7.54□□□□□ -1.2
USH2AO75445 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC7.54□□□□□ -1.2
USH2AO75445 AC015967.2-201ENST00000624092 234 ntBASIC7.54□□□□□ -1.2
USH2AO75445 AC006435.4-201ENST00000625037 234 ntBASIC7.54□□□□□ -1.2
USH2AO75445 AL356737.1-201ENST00000634391 234 ntBASIC7.54□□□□□ -1.2
USH2AO75445 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC7.54□□□□□ -1.2
USH2AO75445 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
USH2AO75445 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
USH2AO75445 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC7.54□□□□□ -1.2
USH2AO75445 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC7.54□□□□□ -1.2
USH2AO75445 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC7.54□□□□□ -1.2
USH2AO75445 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC7.54□□□□□ -1.2
USH2AO75445 LINC00896-202ENST00000609602 2128 ntBASIC7.54□□□□□ -1.2
USH2AO75445 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC7.54□□□□□ -1.2
USH2AO75445 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC7.54□□□□□ -1.2
USH2AO75445 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
USH2AO75445 MBP-227ENST00000526111 581 ntTSL 4 BASIC7.54□□□□□ -1.2
USH2AO75445 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
USH2AO75445 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC7.54□□□□□ -1.2
USH2AO75445 AL133215.2-201ENST00000609242 977 ntBASIC7.54□□□□□ -1.2
USH2AO75445 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
USH2AO75445 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC7.53□□□□□ -1.2
USH2AO75445 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC7.53□□□□□ -1.2
USH2AO75445 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC7.53□□□□□ -1.2
USH2AO75445 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC7.53□□□□□ -1.2
USH2AO75445 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC7.53□□□□□ -1.2
USH2AO75445 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 RPL17P11-201ENST00000417593 544 ntBASIC7.53□□□□□ -1.2
USH2AO75445 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC7.53□□□□□ -1.2
USH2AO75445 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC7.53□□□□□ -1.2
USH2AO75445 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC7.53□□□□□ -1.2
USH2AO75445 PAM16-204ENST00000571941 674 ntTSL 3 BASIC7.53□□□□□ -1.2
USH2AO75445 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC7.53□□□□□ -1.2
USH2AO75445 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC7.53□□□□□ -1.2
USH2AO75445 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 RN7SL618P-201ENST00000477850 296 ntBASIC7.53□□□□□ -1.2
USH2AO75445 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC7.53□□□□□ -1.2
USH2AO75445 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC7.53□□□□□ -1.2
USH2AO75445 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC7.53□□□□□ -1.2
USH2AO75445 AL135999.2-201ENST00000622438 1686 ntBASIC7.53□□□□□ -1.2
USH2AO75445 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC7.53□□□□□ -1.2
USH2AO75445 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
USH2AO75445 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC7.53□□□□□ -1.2
USH2AO75445 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC7.53□□□□□ -1.2
USH2AO75445 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC7.53□□□□□ -1.2
USH2AO75445 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC7.53□□□□□ -1.2
USH2AO75445 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC7.53□□□□□ -1.2
USH2AO75445 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC7.53□□□□□ -1.2
USH2AO75445 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC7.53□□□□□ -1.2
USH2AO75445 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC7.53□□□□□ -1.2
USH2AO75445 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC7.53□□□□□ -1.2
USH2AO75445 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC7.53□□□□□ -1.2
USH2AO75445 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC7.53□□□□□ -1.2
USH2AO75445 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC7.53□□□□□ -1.2
USH2AO75445 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 SNCG-201ENST00000348795 684 ntTSL 2 BASIC7.53□□□□□ -1.2
USH2AO75445 MIR1247-201ENST00000408206 136 ntBASIC7.53□□□□□ -1.2
USH2AO75445 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
USH2AO75445 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC7.53□□□□□ -1.2
USH2AO75445 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC7.53□□□□□ -1.2
USH2AO75445 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC7.53□□□□□ -1.2
USH2AO75445 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC7.53□□□□□ -1.2
USH2AO75445 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC7.53□□□□□ -1.2
USH2AO75445 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC7.52□□□□□ -1.2
USH2AO75445 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.2
USH2AO75445 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC7.52□□□□□ -1.21
USH2AO75445 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
USH2AO75445 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC7.52□□□□□ -1.21
USH2AO75445 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC7.52□□□□□ -1.21
USH2AO75445 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms