Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP4O75161 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP4O75161 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP4O75161 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC23.73■■□□□ 1.39
NPHP4O75161 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP4O75161 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP4O75161 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP4O75161 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC23.73■■□□□ 1.39
NPHP4O75161 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP4O75161 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP4O75161 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP4O75161 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP4O75161 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC23.73■■□□□ 1.39
NPHP4O75161 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC23.73■■□□□ 1.39
NPHP4O75161 HLA-DPB2-205ENST00000435074 1188 ntBASIC23.73■■□□□ 1.39
NPHP4O75161 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC23.73■■□□□ 1.39
NPHP4O75161 SRD5A3P1-201ENST00000603021 949 ntBASIC23.73■■□□□ 1.39
NPHP4O75161 MIR6869-201ENST00000619434 62 ntBASIC23.73■■□□□ 1.39
NPHP4O75161 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
NPHP4O75161 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC23.73■■□□□ 1.39
NPHP4O75161 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
NPHP4O75161 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
NPHP4O75161 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC23.72■■□□□ 1.39
NPHP4O75161 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC23.72■■□□□ 1.39
NPHP4O75161 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
NPHP4O75161 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC23.72■■□□□ 1.39
NPHP4O75161 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
NPHP4O75161 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
NPHP4O75161 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC23.72■■□□□ 1.39
NPHP4O75161 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
NPHP4O75161 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
NPHP4O75161 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC23.72■■□□□ 1.39
NPHP4O75161 BOLA2P3-201ENST00000404566 256 ntBASIC23.72■■□□□ 1.39
NPHP4O75161 MIR1908-201ENST00000410394 80 ntBASIC23.72■■□□□ 1.39
NPHP4O75161 AC098850.1-201ENST00000419919 790 ntBASIC23.72■■□□□ 1.39
NPHP4O75161 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC23.72■■□□□ 1.39
NPHP4O75161 STARD13-205ENST00000439831 945 ntTSL 2 BASIC23.72■■□□□ 1.39
NPHP4O75161 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
NPHP4O75161 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC23.72■■□□□ 1.39
NPHP4O75161 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC23.72■■□□□ 1.39
NPHP4O75161 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC23.72■■□□□ 1.39
NPHP4O75161 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC23.72■■□□□ 1.39
NPHP4O75161 CD74-212ENST00000524315 584 ntTSL 5 BASIC23.72■■□□□ 1.39
NPHP4O75161 MPDU1-223ENST00000582151 728 ntBASIC23.72■■□□□ 1.39
NPHP4O75161 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC23.72■■□□□ 1.39
NPHP4O75161 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
NPHP4O75161 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC23.72■■□□□ 1.39
NPHP4O75161 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
NPHP4O75161 SLC9A3P2-201ENST00000447821 2021 ntBASIC23.72■■□□□ 1.39
NPHP4O75161 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
NPHP4O75161 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
NPHP4O75161 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP4O75161 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
NPHP4O75161 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP4O75161 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP4O75161 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP4O75161 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC23.71■■□□□ 1.39
NPHP4O75161 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
NPHP4O75161 AC104989.1-201ENST00000519711 778 ntBASIC23.71■■□□□ 1.39
NPHP4O75161 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC23.71■■□□□ 1.39
NPHP4O75161 AC123567.1-201ENST00000548294 1261 ntBASIC23.71■■□□□ 1.39
NPHP4O75161 IGHV3OR16-16-201ENST00000563644 343 ntBASIC23.71■■□□□ 1.39
NPHP4O75161 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC23.71■■□□□ 1.39
NPHP4O75161 CYP2A7P1-201ENST00000595391 815 ntBASIC23.71■■□□□ 1.39
NPHP4O75161 TEX48-202ENST00000612244 662 ntTSL 3 BASIC23.71■■□□□ 1.39
NPHP4O75161 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC23.71■■□□□ 1.39
NPHP4O75161 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP4O75161 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC23.71■■□□□ 1.39
NPHP4O75161 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC23.71■■□□□ 1.39
NPHP4O75161 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP4O75161 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP4O75161 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP4O75161 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
NPHP4O75161 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP4O75161 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NPHP4O75161 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC23.71■■□□□ 1.39
NPHP4O75161 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC23.7■■□□□ 1.38
NPHP4O75161 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
NPHP4O75161 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC23.7■■□□□ 1.38
NPHP4O75161 AC023310.3-201ENST00000557027 670 ntBASIC23.7■■□□□ 1.38
NPHP4O75161 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC23.7■■□□□ 1.38
NPHP4O75161 AC100756.1-201ENST00000562736 682 ntBASIC23.7■■□□□ 1.38
NPHP4O75161 AC138749.3-201ENST00000567691 622 ntBASIC23.7■■□□□ 1.38
NPHP4O75161 MNT-208ENST00000575394 606 ntTSL 4 BASIC23.7■■□□□ 1.38
NPHP4O75161 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC23.7■■□□□ 1.38
NPHP4O75161 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC23.7■■□□□ 1.38
NPHP4O75161 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC23.7■■□□□ 1.38
NPHP4O75161 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
NPHP4O75161 AC116165.1-201ENST00000611806 668 ntBASIC23.7■■□□□ 1.38
NPHP4O75161 WNT11-204ENST00000621122 789 ntTSL 5 BASIC23.7■■□□□ 1.38
NPHP4O75161 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
NPHP4O75161 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
NPHP4O75161 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
NPHP4O75161 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
NPHP4O75161 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
NPHP4O75161 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
NPHP4O75161 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
NPHP4O75161 LYSMD4-203ENST00000378904 2122 ntBASIC23.7■■□□□ 1.38
NPHP4O75161 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC23.7■■□□□ 1.38
NPHP4O75161 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms