Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 GK-202ENST00000378941 458 ntTSL 3 BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 GAPDHP21-201ENST00000450301 1010 ntBASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 DUX4L17-201ENST00000557360 1267 ntBASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 AC008761.3-201ENST00000624803 892 ntBASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.43■□□□□ 0.22
PCDHGA1Q9Y5H4 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 AC005412.3-201ENST00000580309 715 ntBASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCDHGA1Q9Y5H4 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 LINC01225-203ENST00000563550 1244 ntBASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 AC026150.2-201ENST00000564693 1156 ntBASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 LINC02560-201ENST00000596379 459 ntBASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 AL358472.5-202ENST00000641448 1267 ntBASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDHGA1Q9Y5H4 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms