Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 RN7SL555P-201ENST00000584742 339 ntBASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 ATF5-205ENST00000600336 682 ntTSL 2 BASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 AC018635.2-201ENST00000608625 364 ntBASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 AC097724.1-201ENST00000609581 426 ntBASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 AL499627.1-201ENST00000569373 2188 ntBASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 ACTG1P3-201ENST00000431775 1114 ntBASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 TSACC-208ENST00000481479 741 ntTSL 2 BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 AC126915.1-201ENST00000522847 1038 ntBASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 IQSEC3P1-201ENST00000538799 536 ntBASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 AC079316.1-201ENST00000548397 411 ntBASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 SUOX-214ENST00000551841 906 ntTSL 3 BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 AC020914.3-201ENST00000594712 304 ntBASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 FLJ13224-201ENST00000313737 1514 ntBASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 FOXO1B-201ENST00000504678 1527 ntBASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL25A1Q9BXS0 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.08■□□□□ 0.33
COL25A1Q9BXS0 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
COL25A1Q9BXS0 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC17.08■□□□□ 0.32
COL25A1Q9BXS0 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC17.08■□□□□ 0.32
COL25A1Q9BXS0 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC17.08■□□□□ 0.32
COL25A1Q9BXS0 MIR1227-201ENST00000408484 88 ntBASIC17.08■□□□□ 0.32
COL25A1Q9BXS0 OLR1-203ENST00000432556 950 ntTSL 2 BASIC17.08■□□□□ 0.32
COL25A1Q9BXS0 AC091804.1-201ENST00000486888 567 ntBASIC17.08■□□□□ 0.32
COL25A1Q9BXS0 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC17.08■□□□□ 0.32
COL25A1Q9BXS0 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC17.08■□□□□ 0.32
COL25A1Q9BXS0 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.08■□□□□ 0.32
COL25A1Q9BXS0 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC17.08■□□□□ 0.32
COL25A1Q9BXS0 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC17.08■□□□□ 0.32
COL25A1Q9BXS0 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC17.08■□□□□ 0.32
COL25A1Q9BXS0 AL136301.1-201ENST00000615830 422 ntBASIC17.08■□□□□ 0.32
COL25A1Q9BXS0 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
COL25A1Q9BXS0 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
COL25A1Q9BXS0 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL25A1Q9BXS0 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL25A1Q9BXS0 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL25A1Q9BXS0 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL25A1Q9BXS0 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 MIR3909-201ENST00000579518 119 ntBASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
COL25A1Q9BXS0 GMCL1P1-201ENST00000463439 1581 ntBASIC17.06■□□□□ 0.32
COL25A1Q9BXS0 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL25A1Q9BXS0 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL25A1Q9BXS0 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL25A1Q9BXS0 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL25A1Q9BXS0 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL25A1Q9BXS0 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
COL25A1Q9BXS0 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms