Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 MFF-223ENST00000524634 647 ntTSL 2 BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 AC244093.1-201ENST00000610837 814 ntBASIC16.75■□□□□ 0.27
VPS13AQ96RL7 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 AL844908.2-201ENST00000609461 460 ntBASIC16.75■□□□□ 0.27
VPS13AQ96RL7 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 AC016027.1-202ENST00000607927 1699 ntBASIC16.75■□□□□ 0.27
VPS13AQ96RL7 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 IGHV3-62-201ENST00000520057 340 ntBASIC16.75■□□□□ 0.27
VPS13AQ96RL7 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VPS13AQ96RL7 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 AC012317.2-201ENST00000623305 2251 ntBASIC16.74■□□□□ 0.27
VPS13AQ96RL7 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 HMGA1P7-201ENST00000406908 502 ntBASIC16.74■□□□□ 0.27
VPS13AQ96RL7 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 PPA1-206ENST00000625364 644 ntTSL 5 BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 BX276092.7-203ENST00000637198 1536 ntBASIC16.74■□□□□ 0.27
VPS13AQ96RL7 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 EFTUD1P1-204ENST00000560401 1798 ntBASIC16.74■□□□□ 0.27
VPS13AQ96RL7 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 NAT9-224ENST00000583757 583 ntTSL 3 BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS13AQ96RL7 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 AL080243.2-201ENST00000418783 582 ntBASIC16.73■□□□□ 0.27
VPS13AQ96RL7 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 ELK1P1-201ENST00000485699 580 ntBASIC16.73■□□□□ 0.27
VPS13AQ96RL7 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 ZNF890P-202ENST00000530367 1156 ntBASIC16.73■□□□□ 0.27
VPS13AQ96RL7 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 SPDYE19P-201ENST00000338590 713 ntBASIC16.73■□□□□ 0.27
VPS13AQ96RL7 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC16.73■□□□□ 0.27
VPS13AQ96RL7 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms