Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
CCDC42Q96M95 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC42Q96M95 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC42Q96M95 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC42Q96M95 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC42Q96M95 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC42Q96M95 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC42Q96M95 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC42Q96M95 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.54■□□□□ 0.56
CCDC42Q96M95 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC42Q96M95 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.54■□□□□ 0.56
CCDC42Q96M95 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC42Q96M95 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC42Q96M95 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
CCDC42Q96M95 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC42Q96M95 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC42Q96M95 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC42Q96M95 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC42Q96M95 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC42Q96M95 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC42Q96M95 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC42Q96M95 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC42Q96M95 AC006449.5-201ENST00000610658 2098 ntBASIC18.53■□□□□ 0.56
CCDC42Q96M95 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC42Q96M95 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC42Q96M95 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC42Q96M95 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC42Q96M95 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC42Q96M95 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC42Q96M95 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC42Q96M95 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC42Q96M95 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC42Q96M95 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC42Q96M95 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.53■□□□□ 0.56
CCDC42Q96M95 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.53■□□□□ 0.56
CCDC42Q96M95 STK19B-204ENST00000512515 211 ntBASIC18.53■□□□□ 0.56
CCDC42Q96M95 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.53■□□□□ 0.56
CCDC42Q96M95 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.53■□□□□ 0.56
CCDC42Q96M95 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC18.53■□□□□ 0.56
CCDC42Q96M95 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC42Q96M95 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.53■□□□□ 0.56
CCDC42Q96M95 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC42Q96M95 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC42Q96M95 AC005336.2-201ENST00000593183 939 ntBASIC18.53■□□□□ 0.56
CCDC42Q96M95 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.53■□□□□ 0.56
CCDC42Q96M95 AC083849.1-201ENST00000615227 514 ntBASIC18.53■□□□□ 0.56
CCDC42Q96M95 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.53■□□□□ 0.56
CCDC42Q96M95 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.53■□□□□ 0.56
CCDC42Q96M95 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC42Q96M95 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC42Q96M95 FRMD8P1-201ENST00000440433 1524 ntBASIC18.53■□□□□ 0.56
CCDC42Q96M95 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC42Q96M95 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.53■□□□□ 0.56
CCDC42Q96M95 AL353593.2-201ENST00000602529 1483 ntBASIC18.52■□□□□ 0.56
CCDC42Q96M95 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC42Q96M95 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
CCDC42Q96M95 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC42Q96M95 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC18.52■□□□□ 0.56
CCDC42Q96M95 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC42Q96M95 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.52■□□□□ 0.56
CCDC42Q96M95 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC18.52■□□□□ 0.56
CCDC42Q96M95 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC42Q96M95 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.52■□□□□ 0.56
CCDC42Q96M95 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.52■□□□□ 0.56
CCDC42Q96M95 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.52■□□□□ 0.56
CCDC42Q96M95 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC42Q96M95 AL645929.1-201ENST00000420084 975 ntBASIC18.52■□□□□ 0.56
CCDC42Q96M95 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.52■□□□□ 0.56
CCDC42Q96M95 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.52■□□□□ 0.56
CCDC42Q96M95 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.52■□□□□ 0.56
CCDC42Q96M95 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.52■□□□□ 0.56
CCDC42Q96M95 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC42Q96M95 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC42Q96M95 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.52■□□□□ 0.56
CCDC42Q96M95 AC090616.6-201ENST00000582640 721 ntBASIC18.52■□□□□ 0.56
CCDC42Q96M95 IGHV3-41-201ENST00000613121 348 ntBASIC18.52■□□□□ 0.56
CCDC42Q96M95 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
CCDC42Q96M95 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
CCDC42Q96M95 AC066615.1-201ENST00000640911 628 ntBASIC18.52■□□□□ 0.56
CCDC42Q96M95 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC42Q96M95 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC42Q96M95 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CCDC42Q96M95 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
CCDC42Q96M95 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.52■□□□□ 0.55
CCDC42Q96M95 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC42Q96M95 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.55
CCDC42Q96M95 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.55
CCDC42Q96M95 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC18.52■□□□□ 0.55
CCDC42Q96M95 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC42Q96M95 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC42Q96M95 GPR89P-201ENST00000407924 1495 ntBASIC18.52■□□□□ 0.55
CCDC42Q96M95 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
CCDC42Q96M95 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC42Q96M95 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.52■□□□□ 0.55
CCDC42Q96M95 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC42Q96M95 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC42Q96M95 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC42Q96M95 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC42Q96M95 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC42Q96M95 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms