Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
ERCC4Q92889 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ERCC4Q92889 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ERCC4Q92889 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC19.5■□□□□ 0.71
ERCC4Q92889 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ERCC4Q92889 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
ERCC4Q92889 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ERCC4Q92889 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
ERCC4Q92889 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
ERCC4Q92889 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
ERCC4Q92889 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
ERCC4Q92889 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
ERCC4Q92889 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
ERCC4Q92889 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
ERCC4Q92889 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
ERCC4Q92889 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC19.49■□□□□ 0.71
ERCC4Q92889 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
ERCC4Q92889 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
ERCC4Q92889 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC19.49■□□□□ 0.71
ERCC4Q92889 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
ERCC4Q92889 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
ERCC4Q92889 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
ERCC4Q92889 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ERCC4Q92889 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
ERCC4Q92889 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.49■□□□□ 0.71
ERCC4Q92889 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.49■□□□□ 0.71
ERCC4Q92889 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19.49■□□□□ 0.71
ERCC4Q92889 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.49■□□□□ 0.71
ERCC4Q92889 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ERCC4Q92889 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
ERCC4Q92889 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
ERCC4Q92889 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.49■□□□□ 0.71
ERCC4Q92889 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.49■□□□□ 0.71
ERCC4Q92889 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.49■□□□□ 0.71
ERCC4Q92889 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
ERCC4Q92889 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC19.49■□□□□ 0.71
ERCC4Q92889 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
ERCC4Q92889 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.49■□□□□ 0.71
ERCC4Q92889 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.49■□□□□ 0.71
ERCC4Q92889 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ERCC4Q92889 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ERCC4Q92889 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC19.49■□□□□ 0.71
ERCC4Q92889 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ERCC4Q92889 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ERCC4Q92889 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ERCC4Q92889 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
ERCC4Q92889 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC19.49■□□□□ 0.71
ERCC4Q92889 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ERCC4Q92889 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC19.48■□□□□ 0.71
ERCC4Q92889 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC19.48■□□□□ 0.71
ERCC4Q92889 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC19.48■□□□□ 0.71
ERCC4Q92889 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ERCC4Q92889 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
ERCC4Q92889 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
ERCC4Q92889 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ERCC4Q92889 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.48■□□□□ 0.71
ERCC4Q92889 IGHV3-52-201ENST00000519770 353 ntBASIC19.48■□□□□ 0.71
ERCC4Q92889 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC19.48■□□□□ 0.71
ERCC4Q92889 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.48■□□□□ 0.71
ERCC4Q92889 AC011498.5-201ENST00000592027 486 ntBASIC19.48■□□□□ 0.71
ERCC4Q92889 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.48■□□□□ 0.71
ERCC4Q92889 AL353801.3-201ENST00000609898 542 ntBASIC19.48■□□□□ 0.71
ERCC4Q92889 IGHV3-41-201ENST00000613121 348 ntBASIC19.48■□□□□ 0.71
ERCC4Q92889 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
ERCC4Q92889 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC19.48■□□□□ 0.71
ERCC4Q92889 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
ERCC4Q92889 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ERCC4Q92889 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC19.48■□□□□ 0.71
ERCC4Q92889 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
ERCC4Q92889 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC19.48■□□□□ 0.71
ERCC4Q92889 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
ERCC4Q92889 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
ERCC4Q92889 DOC2GP-204ENST00000639052 2548 ntBASIC19.48■□□□□ 0.71
ERCC4Q92889 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ERCC4Q92889 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC19.48■□□□□ 0.71
ERCC4Q92889 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
ERCC4Q92889 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
ERCC4Q92889 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC19.47■□□□□ 0.71
ERCC4Q92889 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.47■□□□□ 0.71
ERCC4Q92889 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
ERCC4Q92889 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ERCC4Q92889 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.47■□□□□ 0.71
ERCC4Q92889 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.47■□□□□ 0.71
ERCC4Q92889 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.47■□□□□ 0.71
ERCC4Q92889 AP005901.3-202ENST00000581653 237 ntBASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms