Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1AQ8TE12 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 RNF165-205ENST00000588679 2904 ntBASIC16.65■□□□□ 0.26
LMX1AQ8TE12 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 AL139400.1-201ENST00000366220 510 ntBASIC16.65■□□□□ 0.26
LMX1AQ8TE12 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 AL671277.1-201ENST00000429656 993 ntBASIC16.65■□□□□ 0.26
LMX1AQ8TE12 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 AL121761.2-201ENST00000598007 1648 ntBASIC16.65■□□□□ 0.26
LMX1AQ8TE12 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
LMX1AQ8TE12 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
LMX1AQ8TE12 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.64■□□□□ 0.26
LMX1AQ8TE12 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 AC140658.5-201ENST00000438532 169 ntBASIC16.64■□□□□ 0.25
LMX1AQ8TE12 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 MIR4515-201ENST00000584082 81 ntBASIC16.64■□□□□ 0.25
LMX1AQ8TE12 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LMX1AQ8TE12 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 AL390961.4-201ENST00000623958 2535 ntBASIC16.63■□□□□ 0.25
LMX1AQ8TE12 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms