Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 AC009533.2-201ENST00000543664 586 ntBASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 AC078925.2-201ENST00000624013 1973 ntBASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 EGFEM1P-202ENST00000431685 1563 ntBASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 AC233702.3-201ENST00000578656 1387 ntBASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 AC018695.7-201ENST00000624587 2492 ntBASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 TP73-AS1-210ENST00000637775 1455 ntBASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 TSSC2-201ENST00000450217 709 ntBASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLHC1Q8NHS4 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 NFIC-211ENST00000641145 8399 ntBASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 KLF4P1-201ENST00000412782 1185 ntBASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 MINOS1P3-201ENST00000457048 203 ntBASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 TOB2P1-201ENST00000469761 992 ntBASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 AC096582.2-201ENST00000510860 516 ntBASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 AC087388.1-201ENST00000571370 1112 ntBASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 AP002414.4-201ENST00000589764 1148 ntBASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 AC011467.2-201ENST00000598425 242 ntBASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms