Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AL928711.1-201ENST00000570165 459 ntBASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 AC109462.3-201ENST00000573934 613 ntBASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 AC006504.4-201ENST00000592118 1568 ntBASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC19.61■□□□□ 0.73
SH3RF1Q7Z6J0 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 AC046185.3-201ENST00000623228 1824 ntBASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 MKNK2P1-201ENST00000437526 628 ntBASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 AC244107.1-201ENST00000442033 332 ntBASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 VN2R19P-201ENST00000442399 1052 ntBASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 HCG4B-203ENST00000450128 991 ntBASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 AC108073.2-201ENST00000464002 357 ntBASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 MIR4751-201ENST00000578027 74 ntBASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 AD001527.2-201ENST00000622994 785 ntBASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 NKILA-202ENST00000614771 2598 ntBASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SH3RF1Q7Z6J0 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 AC060834.1-201ENST00000443027 2032 ntBASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 METTL26-205ENST00000397666 726 ntTSL 2 BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 ELK2BP-201ENST00000415014 1224 ntBASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 AIRN-201ENST00000601203 4374 ntBASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 AC099398.1-201ENST00000567919 2776 ntBASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC19.59■□□□□ 0.73
SH3RF1Q7Z6J0 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SH3RF1Q7Z6J0 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
SH3RF1Q7Z6J0 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
SH3RF1Q7Z6J0 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SH3RF1Q7Z6J0 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
SH3RF1Q7Z6J0 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SH3RF1Q7Z6J0 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
SH3RF1Q7Z6J0 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
SH3RF1Q7Z6J0 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SH3RF1Q7Z6J0 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SH3RF1Q7Z6J0 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 AL139400.1-201ENST00000366220 510 ntBASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 MYCLP1-201ENST00000372451 1075 ntBASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 SPDYE21P-201ENST00000413323 827 ntBASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms