Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 HNRNPRP1-201ENST00000453465 1695 ntBASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 AC133963.1-201ENST00000504166 1679 ntBASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 ARSEP1-201ENST00000420443 635 ntBASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
CCDC88AQ3V6T2 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
CCDC88AQ3V6T2 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.77■□□□□ 0.91
CCDC88AQ3V6T2 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 PTPA-220ENST00000436883 532 ntTSL 4 BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 RPS2P32-201ENST00000439199 892 ntBASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 API5-211ENST00000534695 560 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 NOC2LP1-202ENST00000452600 2235 ntBASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC88AQ3V6T2 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 HNRNPA3P1-201ENST00000401429 1139 ntBASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 HNRNPA3P5-201ENST00000455201 833 ntBASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 MPI-209ENST00000564003 1195 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 AC140912.1-201ENST00000577171 1054 ntBASIC20.75■□□□□ 0.91
CCDC88AQ3V6T2 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC88AQ3V6T2 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC88AQ3V6T2 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC88AQ3V6T2 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC88AQ3V6T2 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
CCDC88AQ3V6T2 AL138688.1-201ENST00000624851 1594 ntBASIC20.74■□□□□ 0.91
CCDC88AQ3V6T2 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
CCDC88AQ3V6T2 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
CCDC88AQ3V6T2 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC20.74■□□□□ 0.91
CCDC88AQ3V6T2 SPDYE12P-201ENST00000618416 771 ntBASIC20.74■□□□□ 0.91
CCDC88AQ3V6T2 AC008267.7-201ENST00000624570 1194 ntBASIC20.74■□□□□ 0.91
CCDC88AQ3V6T2 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC88AQ3V6T2 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
CCDC88AQ3V6T2 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC88AQ3V6T2 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC88AQ3V6T2 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC88AQ3V6T2 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC88AQ3V6T2 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC88AQ3V6T2 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC88AQ3V6T2 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC88AQ3V6T2 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms