Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 AC079781.4-201ENST00000641908 219 ntBASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC144BQ3MJ40 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 AC008894.3-201ENST00000624324 3103 ntBASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 AL138688.1-201ENST00000624851 1594 ntBASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 COA5-202ENST00000409997 557 ntTSL 4 BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 PMS2P2-201ENST00000425039 1128 ntBASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 CYB561-217ENST00000582997 877 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC144BQ3MJ40 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 AL020989.1-201ENST00000422979 469 ntBASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 HNRNPA1P28-201ENST00000424481 961 ntBASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 AL353593.2-201ENST00000602529 1483 ntBASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
CCDC144BQ3MJ40 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 AC100803.2-201ENST00000562459 1963 ntBASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.9■□□□□ 0.78
CCDC144BQ3MJ40 AC004706.3-202ENST00000621574 984 ntBASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms