Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
RNF4P78317 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
RNF4P78317 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
RNF4P78317 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
RNF4P78317 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
RNF4P78317 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
RNF4P78317 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC15.88■□□□□ 0.13
RNF4P78317 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
RNF4P78317 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
RNF4P78317 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
RNF4P78317 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
RNF4P78317 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
RNF4P78317 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
RNF4P78317 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
RNF4P78317 MRPL20P1-201ENST00000400819 433 ntBASIC15.88■□□□□ 0.13
RNF4P78317 LBH-204ENST00000406087 559 ntTSL 4 BASIC15.88■□□□□ 0.13
RNF4P78317 PMS2P1-201ENST00000431037 1228 ntBASIC15.88■□□□□ 0.13
RNF4P78317 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.88■□□□□ 0.13
RNF4P78317 PAWRP1-201ENST00000451083 565 ntBASIC15.88■□□□□ 0.13
RNF4P78317 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC15.88■□□□□ 0.13
RNF4P78317 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
RNF4P78317 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.88■□□□□ 0.13
RNF4P78317 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.88■□□□□ 0.13
RNF4P78317 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
RNF4P78317 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
RNF4P78317 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
RNF4P78317 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
RNF4P78317 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
RNF4P78317 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
RNF4P78317 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
RNF4P78317 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
RNF4P78317 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
RNF4P78317 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.87■□□□□ 0.13
RNF4P78317 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC15.87■□□□□ 0.13
RNF4P78317 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
RNF4P78317 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 HNRNPRP1-201ENST00000453465 1695 ntBASIC15.87■□□□□ 0.13
RNF4P78317 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.87■□□□□ 0.13
RNF4P78317 KRT18P58-201ENST00000527480 1120 ntBASIC15.87■□□□□ 0.13
RNF4P78317 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC15.87■□□□□ 0.13
RNF4P78317 MIR4751-201ENST00000578027 74 ntBASIC15.87■□□□□ 0.13
RNF4P78317 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.87■□□□□ 0.13
RNF4P78317 AL671883.3-201ENST00000603274 991 ntBASIC15.87■□□□□ 0.13
RNF4P78317 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
RNF4P78317 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
RNF4P78317 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
RNF4P78317 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC15.86■□□□□ 0.13
RNF4P78317 AL023806.1-201ENST00000603994 1649 ntBASIC15.86■□□□□ 0.13
RNF4P78317 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
RNF4P78317 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC15.86■□□□□ 0.13
RNF4P78317 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
RNF4P78317 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC15.86■□□□□ 0.13
RNF4P78317 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
RNF4P78317 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.86■□□□□ 0.13
RNF4P78317 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
RNF4P78317 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
RNF4P78317 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
RNF4P78317 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC15.86■□□□□ 0.13
RNF4P78317 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.86■□□□□ 0.13
RNF4P78317 CRYGEP-201ENST00000412192 528 ntBASIC15.86■□□□□ 0.13
RNF4P78317 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.86■□□□□ 0.13
RNF4P78317 PRSS29P-201ENST00000440800 595 ntBASIC15.86■□□□□ 0.13
RNF4P78317 AL591424.1-201ENST00000442569 1213 ntBASIC15.86■□□□□ 0.13
RNF4P78317 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
RNF4P78317 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.86■□□□□ 0.13
RNF4P78317 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC15.86■□□□□ 0.13
RNF4P78317 AC027601.4-201ENST00000611259 610 ntBASIC15.86■□□□□ 0.13
RNF4P78317 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
RNF4P78317 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
RNF4P78317 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
RNF4P78317 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
RNF4P78317 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
RNF4P78317 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
RNF4P78317 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
RNF4P78317 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
RNF4P78317 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC15.86■□□□□ 0.13
RNF4P78317 AC139713.2-201ENST00000641328 2723 ntBASIC15.86■□□□□ 0.13
RNF4P78317 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms