Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC20.12■□□□□ 0.81
RHBDL3P58872 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RHBDL3P58872 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RHBDL3P58872 AL133373.2-201ENST00000623187 2828 ntBASIC20.12■□□□□ 0.81
RHBDL3P58872 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RHBDL3P58872 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RHBDL3P58872 MIR770-201ENST00000390219 98 ntBASIC20.12■□□□□ 0.81
RHBDL3P58872 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RHBDL3P58872 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RHBDL3P58872 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RHBDL3P58872 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC20.12■□□□□ 0.81
RHBDL3P58872 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RHBDL3P58872 AC025678.2-201ENST00000562061 970 ntBASIC20.12■□□□□ 0.81
RHBDL3P58872 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
RHBDL3P58872 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC20.12■□□□□ 0.81
RHBDL3P58872 MIR4492-201ENST00000581627 80 ntBASIC20.12■□□□□ 0.81
RHBDL3P58872 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
RHBDL3P58872 AL031055.1-201ENST00000606362 631 ntBASIC20.12■□□□□ 0.81
RHBDL3P58872 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RHBDL3P58872 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
RHBDL3P58872 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RHBDL3P58872 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC20.12■□□□□ 0.81
RHBDL3P58872 AC131009.4-201ENST00000624048 1740 ntBASIC20.12■□□□□ 0.81
RHBDL3P58872 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RHBDL3P58872 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.12■□□□□ 0.81
RHBDL3P58872 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC20.12■□□□□ 0.81
RHBDL3P58872 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RHBDL3P58872 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RHBDL3P58872 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RHBDL3P58872 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
RHBDL3P58872 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
RHBDL3P58872 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RHBDL3P58872 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC20.11■□□□□ 0.81
RHBDL3P58872 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
RHBDL3P58872 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RHBDL3P58872 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
RHBDL3P58872 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC20.11■□□□□ 0.81
RHBDL3P58872 PP12613-201ENST00000424958 2230 ntBASIC20.11■□□□□ 0.81
RHBDL3P58872 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC20.11■□□□□ 0.81
RHBDL3P58872 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RHBDL3P58872 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC20.11■□□□□ 0.81
RHBDL3P58872 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RHBDL3P58872 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
RHBDL3P58872 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RHBDL3P58872 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC20.11■□□□□ 0.81
RHBDL3P58872 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RHBDL3P58872 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RHBDL3P58872 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC20.11■□□□□ 0.81
RHBDL3P58872 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RHBDL3P58872 AC087641.1-201ENST00000557561 1021 ntBASIC20.11■□□□□ 0.81
RHBDL3P58872 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC20.11■□□□□ 0.81
RHBDL3P58872 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
RHBDL3P58872 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
RHBDL3P58872 MIR3909-201ENST00000579518 119 ntBASIC20.11■□□□□ 0.81
RHBDL3P58872 AC015911.4-201ENST00000588022 1070 ntBASIC20.11■□□□□ 0.81
RHBDL3P58872 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC20.11■□□□□ 0.81
RHBDL3P58872 AC093512.1-201ENST00000617969 520 ntBASIC20.11■□□□□ 0.81
RHBDL3P58872 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC20.11■□□□□ 0.81
RHBDL3P58872 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC20.11■□□□□ 0.81
RHBDL3P58872 AC084121.4-201ENST00000641598 221 ntBASIC20.11■□□□□ 0.81
RHBDL3P58872 AF228730.8-201ENST00000642140 221 ntBASIC20.11■□□□□ 0.81
RHBDL3P58872 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RHBDL3P58872 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RHBDL3P58872 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.11■□□□□ 0.81
RHBDL3P58872 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
RHBDL3P58872 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
RHBDL3P58872 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC20.11■□□□□ 0.81
RHBDL3P58872 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RHBDL3P58872 LINC02012-201ENST00000608206 1725 ntBASIC20.1■□□□□ 0.81
RHBDL3P58872 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
RHBDL3P58872 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
RHBDL3P58872 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
RHBDL3P58872 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RHBDL3P58872 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RHBDL3P58872 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
RHBDL3P58872 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
RHBDL3P58872 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
RHBDL3P58872 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
RHBDL3P58872 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC20.1■□□□□ 0.81
RHBDL3P58872 LINC00896-202ENST00000609602 2128 ntBASIC20.1■□□□□ 0.81
RHBDL3P58872 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC20.1■□□□□ 0.81
RHBDL3P58872 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
RHBDL3P58872 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RHBDL3P58872 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RHBDL3P58872 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
RHBDL3P58872 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RHBDL3P58872 RHBDF1P1-201ENST00000427504 1941 ntBASIC20.1■□□□□ 0.81
RHBDL3P58872 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
RHBDL3P58872 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RHBDL3P58872 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC20.09■□□□□ 0.81
RHBDL3P58872 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
RHBDL3P58872 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC20.09■□□□□ 0.81
RHBDL3P58872 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
RHBDL3P58872 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC20.09■□□□□ 0.81
RHBDL3P58872 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
RHBDL3P58872 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RHBDL3P58872 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC20.09■□□□□ 0.81
RHBDL3P58872 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.09■□□□□ 0.81
RHBDL3P58872 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RHBDL3P58872 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms