Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
CLRN1P58418 PRR29-207ENST00000580752 458 ntTSL 3 BASIC15.37■□□□□ 0.05
CLRN1P58418 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC15.37■□□□□ 0.05
CLRN1P58418 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC15.37■□□□□ 0.05
CLRN1P58418 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC15.37■□□□□ 0.05
CLRN1P58418 AL732292.2-201ENST00000609649 430 ntBASIC15.37■□□□□ 0.05
CLRN1P58418 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CLRN1P58418 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC15.37■□□□□ 0.05
CLRN1P58418 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CLRN1P58418 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC15.37■□□□□ 0.05
CLRN1P58418 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
CLRN1P58418 AD000864.1-201ENST00000624076 2295 ntBASIC15.37■□□□□ 0.05
CLRN1P58418 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLRN1P58418 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN1P58418 EGFEM1P-202ENST00000431685 1563 ntBASIC15.36■□□□□ 0.05
CLRN1P58418 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN1P58418 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.36■□□□□ 0.05
CLRN1P58418 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN1P58418 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN1P58418 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN1P58418 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN1P58418 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN1P58418 AC148477.5-201ENST00000625164 1645 ntBASIC15.36■□□□□ 0.05
CLRN1P58418 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN1P58418 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN1P58418 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC15.36■□□□□ 0.05
CLRN1P58418 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.36■□□□□ 0.05
CLRN1P58418 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN1P58418 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN1P58418 TLE1-202ENST00000376484 666 ntTSL 3 BASIC15.36■□□□□ 0.05
CLRN1P58418 SLC25A1P3-201ENST00000395415 828 ntBASIC15.36■□□□□ 0.05
CLRN1P58418 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC15.36■□□□□ 0.05
CLRN1P58418 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC15.36■□□□□ 0.05
CLRN1P58418 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC15.36■□□□□ 0.05
CLRN1P58418 S100A2-206ENST00000497140 697 ntTSL 2 BASIC15.36■□□□□ 0.05
CLRN1P58418 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN1P58418 METTL23-204ENST00000586752 904 ntTSL 2 BASIC15.36■□□□□ 0.05
CLRN1P58418 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC15.36■□□□□ 0.05
CLRN1P58418 COPE-211ENST00000600932 1144 ntTSL 5 BASIC15.36■□□□□ 0.05
CLRN1P58418 IGHV3OR16-7-201ENST00000604106 360 ntBASIC15.36■□□□□ 0.05
CLRN1P58418 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN1P58418 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC15.36■□□□□ 0.05
CLRN1P58418 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC15.36■□□□□ 0.05
CLRN1P58418 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.36■□□□□ 0.05
CLRN1P58418 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN1P58418 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN1P58418 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC15.36■□□□□ 0.05
CLRN1P58418 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN1P58418 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN1P58418 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN1P58418 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC15.36■□□□□ 0.05
CLRN1P58418 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
CLRN1P58418 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN1P58418 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN1P58418 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC15.36■□□□□ 0.05
CLRN1P58418 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
CLRN1P58418 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN1P58418 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
CLRN1P58418 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN1P58418 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN1P58418 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN1P58418 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN1P58418 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN1P58418 AC060834.1-201ENST00000443027 2032 ntBASIC15.35■□□□□ 0.05
CLRN1P58418 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC15.35■□□□□ 0.05
CLRN1P58418 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN1P58418 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
CLRN1P58418 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN1P58418 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC15.35■□□□□ 0.05
CLRN1P58418 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC15.35■□□□□ 0.05
CLRN1P58418 LINC01711-201ENST00000598340 967 ntBASIC15.35■□□□□ 0.05
CLRN1P58418 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
CLRN1P58418 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN1P58418 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
CLRN1P58418 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN1P58418 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN1P58418 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN1P58418 AC079776.2-201ENST00000641154 1609 ntBASIC15.35■□□□□ 0.05
CLRN1P58418 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
CLRN1P58418 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN1P58418 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN1P58418 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
CLRN1P58418 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN1P58418 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN1P58418 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN1P58418 AP005117.1-201ENST00000584346 1413 ntBASIC15.34■□□□□ 0.05
CLRN1P58418 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN1P58418 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC15.34■□□□□ 0.05
CLRN1P58418 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN1P58418 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.34■□□□□ 0.05
CLRN1P58418 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC15.34■□□□□ 0.05
CLRN1P58418 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN1P58418 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms