Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA3P55318 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC12.95□□□□□ -0.34
FOXA3P55318 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA3P55318 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA3P55318 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC12.95□□□□□ -0.34
FOXA3P55318 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA3P55318 AC092364.2-201ENST00000596710 2692 ntBASIC12.95□□□□□ -0.34
FOXA3P55318 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
FOXA3P55318 KRT8P47-201ENST00000604727 1398 ntBASIC12.94□□□□□ -0.34
FOXA3P55318 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
FOXA3P55318 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
FOXA3P55318 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC12.94□□□□□ -0.34
FOXA3P55318 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
FOXA3P55318 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
FOXA3P55318 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC12.94□□□□□ -0.34
FOXA3P55318 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 AC144831.1-201ENST00000573312 2656 ntBASIC12.94□□□□□ -0.34
FOXA3P55318 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC12.94□□□□□ -0.34
FOXA3P55318 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC12.94□□□□□ -0.34
FOXA3P55318 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC12.94□□□□□ -0.34
FOXA3P55318 FDX2-206ENST00000492239 773 ntTSL 2 BASIC12.94□□□□□ -0.34
FOXA3P55318 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC12.94□□□□□ -0.34
FOXA3P55318 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC12.94□□□□□ -0.34
FOXA3P55318 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC12.94□□□□□ -0.34
FOXA3P55318 KLF13-207ENST00000560473 489 ntTSL 3 BASIC12.94□□□□□ -0.34
FOXA3P55318 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC12.94□□□□□ -0.34
FOXA3P55318 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
FOXA3P55318 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC12.94□□□□□ -0.34
FOXA3P55318 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC12.94□□□□□ -0.34
FOXA3P55318 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC12.94□□□□□ -0.34
FOXA3P55318 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC12.94□□□□□ -0.34
FOXA3P55318 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
FOXA3P55318 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC12.94□□□□□ -0.34
FOXA3P55318 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA3P55318 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC12.93□□□□□ -0.34
FOXA3P55318 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
FOXA3P55318 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
FOXA3P55318 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC12.93□□□□□ -0.34
FOXA3P55318 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA3P55318 MIR600HG-201ENST00000449175 5984 ntBASIC12.93□□□□□ -0.34
FOXA3P55318 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC12.93□□□□□ -0.34
FOXA3P55318 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA3P55318 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA3P55318 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC12.93□□□□□ -0.34
FOXA3P55318 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC12.93□□□□□ -0.34
FOXA3P55318 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
FOXA3P55318 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC12.93□□□□□ -0.34
FOXA3P55318 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA3P55318 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA3P55318 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
FOXA3P55318 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA3P55318 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA3P55318 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA3P55318 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC12.93□□□□□ -0.34
FOXA3P55318 ILF2-202ENST00000368681 726 ntTSL 2 BASIC12.93□□□□□ -0.34
FOXA3P55318 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA3P55318 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC12.93□□□□□ -0.34
FOXA3P55318 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC12.93□□□□□ -0.34
FOXA3P55318 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC12.93□□□□□ -0.34
FOXA3P55318 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC12.93□□□□□ -0.34
FOXA3P55318 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC12.93□□□□□ -0.34
FOXA3P55318 MMAB-206ENST00000540016 945 ntTSL 3 BASIC12.93□□□□□ -0.34
FOXA3P55318 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC12.93□□□□□ -0.34
FOXA3P55318 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC12.93□□□□□ -0.34
FOXA3P55318 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC12.93□□□□□ -0.34
FOXA3P55318 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA3P55318 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA3P55318 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA3P55318 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC12.93□□□□□ -0.34
FOXA3P55318 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA3P55318 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA3P55318 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA3P55318 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC12.93□□□□□ -0.34
FOXA3P55318 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC12.93□□□□□ -0.34
FOXA3P55318 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms