Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC20.31■□□□□ 0.84
COL4A5P29400 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A5P29400 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
COL4A5P29400 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC20.31■□□□□ 0.84
COL4A5P29400 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC20.31■□□□□ 0.84
COL4A5P29400 AL133215.2-201ENST00000609242 977 ntBASIC20.31■□□□□ 0.84
COL4A5P29400 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
COL4A5P29400 AC104581.1-202ENST00000635932 2618 ntBASIC20.31■□□□□ 0.84
COL4A5P29400 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A5P29400 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
COL4A5P29400 AC087499.5-201ENST00000452760 1342 ntBASIC20.3■□□□□ 0.84
COL4A5P29400 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A5P29400 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
COL4A5P29400 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A5P29400 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A5P29400 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A5P29400 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
COL4A5P29400 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC20.3■□□□□ 0.84
COL4A5P29400 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
COL4A5P29400 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
COL4A5P29400 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC20.3■□□□□ 0.84
COL4A5P29400 POLE2-203ENST00000553805 496 ntTSL 2 BASIC20.3■□□□□ 0.84
COL4A5P29400 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC20.3■□□□□ 0.84
COL4A5P29400 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC20.3■□□□□ 0.84
COL4A5P29400 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A5P29400 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC20.3■□□□□ 0.84
COL4A5P29400 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC20.3■□□□□ 0.84
COL4A5P29400 AL355312.1-201ENST00000407115 2176 ntBASIC20.3■□□□□ 0.84
COL4A5P29400 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
COL4A5P29400 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A5P29400 AC012317.2-201ENST00000623305 2251 ntBASIC20.3■□□□□ 0.84
COL4A5P29400 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC20.3■□□□□ 0.84
COL4A5P29400 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A5P29400 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A5P29400 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A5P29400 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
COL4A5P29400 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.29■□□□□ 0.84
COL4A5P29400 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.29■□□□□ 0.84
COL4A5P29400 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A5P29400 GNAQP1-201ENST00000444815 1067 ntBASIC20.29■□□□□ 0.84
COL4A5P29400 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC20.29■□□□□ 0.84
COL4A5P29400 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC20.29■□□□□ 0.84
COL4A5P29400 MIR4492-201ENST00000581627 80 ntBASIC20.29■□□□□ 0.84
COL4A5P29400 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC20.29■□□□□ 0.84
COL4A5P29400 RAB34-223ENST00000636154 730 ntTSL 2 BASIC20.29■□□□□ 0.84
COL4A5P29400 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC20.29■□□□□ 0.84
COL4A5P29400 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A5P29400 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A5P29400 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC20.29■□□□□ 0.84
COL4A5P29400 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC20.29■□□□□ 0.84
COL4A5P29400 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC20.29■□□□□ 0.84
COL4A5P29400 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC20.29■□□□□ 0.84
COL4A5P29400 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
COL4A5P29400 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC20.29■□□□□ 0.84
COL4A5P29400 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A5P29400 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A5P29400 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
COL4A5P29400 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
COL4A5P29400 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.29■□□□□ 0.84
COL4A5P29400 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A5P29400 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC20.29■□□□□ 0.84
COL4A5P29400 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.29■□□□□ 0.84
COL4A5P29400 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
COL4A5P29400 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
COL4A5P29400 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC20.29■□□□□ 0.84
COL4A5P29400 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A5P29400 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A5P29400 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A5P29400 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC20.29■□□□□ 0.84
COL4A5P29400 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A5P29400 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC20.29■□□□□ 0.84
COL4A5P29400 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A5P29400 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.28■□□□□ 0.84
COL4A5P29400 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC20.28■□□□□ 0.84
COL4A5P29400 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC20.28■□□□□ 0.84
COL4A5P29400 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC20.28■□□□□ 0.84
COL4A5P29400 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC20.28■□□□□ 0.84
COL4A5P29400 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC20.28■□□□□ 0.84
COL4A5P29400 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A5P29400 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A5P29400 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC20.28■□□□□ 0.84
COL4A5P29400 AC007541.1-201ENST00000570282 1469 ntBASIC20.28■□□□□ 0.84
COL4A5P29400 FAM220BP-201ENST00000377689 816 ntBASIC20.28■□□□□ 0.84
COL4A5P29400 HLA-H-201ENST00000383620 1096 ntBASIC20.28■□□□□ 0.84
COL4A5P29400 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC20.28■□□□□ 0.84
COL4A5P29400 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A5P29400 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC20.28■□□□□ 0.84
COL4A5P29400 PRYP6-201ENST00000514804 343 ntBASIC20.28■□□□□ 0.84
COL4A5P29400 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
COL4A5P29400 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A5P29400 MPDU1-223ENST00000582151 728 ntBASIC20.28■□□□□ 0.84
COL4A5P29400 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A5P29400 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A5P29400 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A5P29400 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A5P29400 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC20.28■□□□□ 0.84
COL4A5P29400 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC20.27■□□□□ 0.84
COL4A5P29400 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC20.27■□□□□ 0.84
COL4A5P29400 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL4A5P29400 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms