Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.89■□□□□ 0.29
CDH3P22223 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH3P22223 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH3P22223 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH3P22223 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
CDH3P22223 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CDH3P22223 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CDH3P22223 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.88■□□□□ 0.29
CDH3P22223 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CDH3P22223 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
CDH3P22223 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.88■□□□□ 0.29
CDH3P22223 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
CDH3P22223 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.88■□□□□ 0.29
CDH3P22223 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.88■□□□□ 0.29
CDH3P22223 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH3P22223 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.88■□□□□ 0.29
CDH3P22223 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
CDH3P22223 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.88■□□□□ 0.29
CDH3P22223 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.88■□□□□ 0.29
CDH3P22223 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH3P22223 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH3P22223 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH3P22223 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH3P22223 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH3P22223 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH3P22223 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CDH3P22223 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.88■□□□□ 0.29
CDH3P22223 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CDH3P22223 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.88■□□□□ 0.29
CDH3P22223 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CDH3P22223 AC003669.1-201ENST00000334569 611 ntBASIC16.88■□□□□ 0.29
CDH3P22223 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CDH3P22223 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.88■□□□□ 0.29
CDH3P22223 SPDYE21P-201ENST00000413323 827 ntBASIC16.88■□□□□ 0.29
CDH3P22223 AL590627.1-203ENST00000421194 1026 ntBASIC16.88■□□□□ 0.29
CDH3P22223 AL020989.1-201ENST00000422979 469 ntBASIC16.88■□□□□ 0.29
CDH3P22223 HNRNPDP1-201ENST00000439535 754 ntBASIC16.88■□□□□ 0.29
CDH3P22223 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH3P22223 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.88■□□□□ 0.29
CDH3P22223 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.88■□□□□ 0.29
CDH3P22223 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.88■□□□□ 0.29
CDH3P22223 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.88■□□□□ 0.29
CDH3P22223 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CDH3P22223 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.88■□□□□ 0.29
CDH3P22223 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.88■□□□□ 0.29
CDH3P22223 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.88■□□□□ 0.29
CDH3P22223 FAM215A-202ENST00000632077 792 ntBASIC16.88■□□□□ 0.29
CDH3P22223 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.88■□□□□ 0.29
CDH3P22223 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH3P22223 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
CDH3P22223 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.88■□□□□ 0.29
CDH3P22223 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.88■□□□□ 0.29
CDH3P22223 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
CDH3P22223 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.88■□□□□ 0.29
CDH3P22223 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CDH3P22223 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH3P22223 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH3P22223 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CDH3P22223 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
CDH3P22223 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH3P22223 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CDH3P22223 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDH3P22223 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDH3P22223 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDH3P22223 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
CDH3P22223 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CDH3P22223 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDH3P22223 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDH3P22223 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDH3P22223 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDH3P22223 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CDH3P22223 CROCCP1-201ENST00000426910 5675 ntBASIC16.87■□□□□ 0.29
CDH3P22223 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDH3P22223 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.87■□□□□ 0.29
CDH3P22223 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.87■□□□□ 0.29
CDH3P22223 STK19B-204ENST00000512515 211 ntBASIC16.87■□□□□ 0.29
CDH3P22223 RNA5SP419-201ENST00000515908 135 ntBASIC16.87■□□□□ 0.29
CDH3P22223 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.87■□□□□ 0.29
CDH3P22223 AC025062.2-201ENST00000605477 670 ntBASIC16.87■□□□□ 0.29
CDH3P22223 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.87■□□□□ 0.29
CDH3P22223 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDH3P22223 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.87■□□□□ 0.29
CDH3P22223 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.87■□□□□ 0.29
CDH3P22223 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDH3P22223 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.87■□□□□ 0.29
CDH3P22223 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.87■□□□□ 0.29
CDH3P22223 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.87■□□□□ 0.29
CDH3P22223 AC004817.3-201ENST00000602957 2129 ntBASIC16.87■□□□□ 0.29
CDH3P22223 SIGLEC16-201ENST00000599858 1437 ntBASIC16.87■□□□□ 0.29
CDH3P22223 AC132938.5-201ENST00000624980 1813 ntBASIC16.86■□□□□ 0.29
CDH3P22223 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CDH3P22223 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.86■□□□□ 0.29
CDH3P22223 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CDH3P22223 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
CDH3P22223 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.86■□□□□ 0.29
CDH3P22223 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CDH3P22223 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
CDH3P22223 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
CDH3P22223 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CDH3P22223 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms