Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A1P12109 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A1P12109 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A1P12109 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.77■□□□□ 0.6
COL6A1P12109 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A1P12109 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
COL6A1P12109 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC18.77■□□□□ 0.6
COL6A1P12109 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.77■□□□□ 0.6
COL6A1P12109 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A1P12109 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A1P12109 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
COL6A1P12109 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A1P12109 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC18.77■□□□□ 0.6
COL6A1P12109 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC18.77■□□□□ 0.6
COL6A1P12109 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A1P12109 HLA-V-204ENST00000476601 1289 ntBASIC18.77■□□□□ 0.6
COL6A1P12109 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC18.77■□□□□ 0.6
COL6A1P12109 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC18.77■□□□□ 0.6
COL6A1P12109 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC18.77■□□□□ 0.6
COL6A1P12109 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A1P12109 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC18.77■□□□□ 0.6
COL6A1P12109 MIR3909-201ENST00000579518 119 ntBASIC18.77■□□□□ 0.6
COL6A1P12109 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.77■□□□□ 0.6
COL6A1P12109 AC007967.4-201ENST00000614700 386 ntBASIC18.77■□□□□ 0.6
COL6A1P12109 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.77■□□□□ 0.6
COL6A1P12109 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A1P12109 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
COL6A1P12109 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A1P12109 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A1P12109 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.77■□□□□ 0.6
COL6A1P12109 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL6A1P12109 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A1P12109 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A1P12109 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC18.76■□□□□ 0.59
COL6A1P12109 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A1P12109 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.76■□□□□ 0.59
COL6A1P12109 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A1P12109 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A1P12109 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A1P12109 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A1P12109 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A1P12109 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A1P12109 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A1P12109 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A1P12109 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
COL6A1P12109 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
COL6A1P12109 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A1P12109 RNU1-129P-201ENST00000384064 167 ntBASIC18.76■□□□□ 0.59
COL6A1P12109 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A1P12109 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.76■□□□□ 0.59
COL6A1P12109 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC18.76■□□□□ 0.59
COL6A1P12109 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A1P12109 SATB1-217ENST00000493952 626 ntTSL 3 BASIC18.76■□□□□ 0.59
COL6A1P12109 GIMAP3P-201ENST00000495150 836 ntBASIC18.76■□□□□ 0.59
COL6A1P12109 AC009407.1-201ENST00000568958 598 ntBASIC18.76■□□□□ 0.59
COL6A1P12109 U1.21-201ENST00000580816 167 ntBASIC18.76■□□□□ 0.59
COL6A1P12109 AL139327.4-201ENST00000612362 153 ntBASIC18.76■□□□□ 0.59
COL6A1P12109 IGHV3-72-202ENST00000621503 303 ntBASIC18.76■□□□□ 0.59
COL6A1P12109 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A1P12109 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A1P12109 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A1P12109 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A1P12109 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A1P12109 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.76■□□□□ 0.59
COL6A1P12109 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A1P12109 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
COL6A1P12109 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A1P12109 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.75■□□□□ 0.59
COL6A1P12109 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
COL6A1P12109 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC18.75■□□□□ 0.59
COL6A1P12109 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.75■□□□□ 0.59
COL6A1P12109 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18.75■□□□□ 0.59
COL6A1P12109 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
COL6A1P12109 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
COL6A1P12109 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
COL6A1P12109 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A1P12109 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
COL6A1P12109 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC18.75■□□□□ 0.59
COL6A1P12109 AC098614.1-201ENST00000368528 745 ntBASIC18.75■□□□□ 0.59
COL6A1P12109 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A1P12109 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
COL6A1P12109 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A1P12109 AC079776.1-201ENST00000401540 1152 ntBASIC18.75■□□□□ 0.59
COL6A1P12109 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
COL6A1P12109 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC18.75■□□□□ 0.59
COL6A1P12109 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.75■□□□□ 0.59
COL6A1P12109 AC142381.1-201ENST00000426099 345 ntBASIC18.75■□□□□ 0.59
COL6A1P12109 AL353779.1-201ENST00000434793 351 ntBASIC18.75■□□□□ 0.59
COL6A1P12109 RPS2P32-201ENST00000439199 892 ntBASIC18.75■□□□□ 0.59
COL6A1P12109 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC18.75■□□□□ 0.59
COL6A1P12109 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC18.75■□□□□ 0.59
COL6A1P12109 MTRF1LP2-201ENST00000506027 1122 ntBASIC18.75■□□□□ 0.59
COL6A1P12109 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A1P12109 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC18.75■□□□□ 0.59
COL6A1P12109 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A1P12109 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A1P12109 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC18.75■□□□□ 0.59
COL6A1P12109 RARRES2P9-201ENST00000565168 469 ntBASIC18.75■□□□□ 0.59
COL6A1P12109 AL138918.1-201ENST00000568306 659 ntBASIC18.75■□□□□ 0.59
COL6A1P12109 LINC01451-201ENST00000623792 534 ntBASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms