Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PCNAP12004 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.77■□□□□ 0.28
PCNAP12004 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.28
PCNAP12004 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PCNAP12004 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCNAP12004 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCNAP12004 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.77■□□□□ 0.27
PCNAP12004 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.77■□□□□ 0.27
PCNAP12004 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.77■□□□□ 0.27
PCNAP12004 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.77■□□□□ 0.27
PCNAP12004 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCNAP12004 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.77■□□□□ 0.27
PCNAP12004 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCNAP12004 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCNAP12004 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.27
PCNAP12004 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
PCNAP12004 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
PCNAP12004 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
PCNAP12004 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCNAP12004 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCNAP12004 AC106886.4-201ENST00000623557 2502 ntBASIC16.76■□□□□ 0.27
PCNAP12004 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCNAP12004 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCNAP12004 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.76■□□□□ 0.27
PCNAP12004 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCNAP12004 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCNAP12004 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
PCNAP12004 AL353593.2-201ENST00000602529 1483 ntBASIC16.76■□□□□ 0.27
PCNAP12004 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCNAP12004 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCNAP12004 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCNAP12004 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
PCNAP12004 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCNAP12004 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCNAP12004 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCNAP12004 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.76■□□□□ 0.27
PCNAP12004 KLF4P1-201ENST00000412782 1185 ntBASIC16.76■□□□□ 0.27
PCNAP12004 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.76■□□□□ 0.27
PCNAP12004 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.76■□□□□ 0.27
PCNAP12004 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.76■□□□□ 0.27
PCNAP12004 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.76■□□□□ 0.27
PCNAP12004 STK25P1-201ENST00000585406 838 ntBASIC16.76■□□□□ 0.27
PCNAP12004 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.76■□□□□ 0.27
PCNAP12004 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCNAP12004 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCNAP12004 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.76■□□□□ 0.27
PCNAP12004 AC114341.1-201ENST00000618070 349 ntBASIC16.76■□□□□ 0.27
PCNAP12004 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
PCNAP12004 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
PCNAP12004 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCNAP12004 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.76■□□□□ 0.27
PCNAP12004 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.76■□□□□ 0.27
PCNAP12004 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.76■□□□□ 0.27
PCNAP12004 INTS4P1-201ENST00000438455 1935 ntBASIC16.76■□□□□ 0.27
PCNAP12004 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
PCNAP12004 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCNAP12004 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
PCNAP12004 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCNAP12004 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCNAP12004 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCNAP12004 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.75■□□□□ 0.27
PCNAP12004 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
PCNAP12004 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
PCNAP12004 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCNAP12004 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
PCNAP12004 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCNAP12004 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCNAP12004 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.75■□□□□ 0.27
PCNAP12004 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCNAP12004 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCNAP12004 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCNAP12004 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCNAP12004 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCNAP12004 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCNAP12004 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.75■□□□□ 0.27
PCNAP12004 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCNAP12004 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCNAP12004 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.75■□□□□ 0.27
PCNAP12004 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.75■□□□□ 0.27
PCNAP12004 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCNAP12004 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.75■□□□□ 0.27
PCNAP12004 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.75■□□□□ 0.27
PCNAP12004 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.75■□□□□ 0.27
PCNAP12004 AC073592.5-201ENST00000624854 528 ntBASIC16.75■□□□□ 0.27
PCNAP12004 AL139384.1-201ENST00000612143 3047 ntBASIC16.75■□□□□ 0.27
PCNAP12004 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCNAP12004 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCNAP12004 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.75■□□□□ 0.27
PCNAP12004 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCNAP12004 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.75■□□□□ 0.27
PCNAP12004 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.75■□□□□ 0.27
PCNAP12004 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCNAP12004 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
PCNAP12004 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCNAP12004 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
PCNAP12004 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
PCNAP12004 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCNAP12004 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
PCNAP12004 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCNAP12004 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms