Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC13.93□□□□□ -0.18
FOXA2Q9Y261 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 PCDHA14-201ENST00000506751 2298 ntBASIC13.92□□□□□ -0.18
FOXA2Q9Y261 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 CCS-201ENST00000310190 942 ntTSL 5 BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 FAM220CP-201ENST00000395253 831 ntBASIC13.92□□□□□ -0.18
FOXA2Q9Y261 POM121L3P-201ENST00000419331 1163 ntBASIC13.92□□□□□ -0.18
FOXA2Q9Y261 IGHV3-47-201ENST00000425060 335 ntBASIC13.92□□□□□ -0.18
FOXA2Q9Y261 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 PRELID1P1-202ENST00000567272 903 ntBASIC13.92□□□□□ -0.18
FOXA2Q9Y261 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 EGFEM1P-202ENST00000431685 1563 ntBASIC13.92□□□□□ -0.18
FOXA2Q9Y261 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
FOXA2Q9Y261 AL049757.1-201ENST00000616842 1596 ntBASIC13.92□□□□□ -0.18
FOXA2Q9Y261 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 FLJ38576-201ENST00000623820 2459 ntBASIC13.91□□□□□ -0.18
FOXA2Q9Y261 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 KRT18P56-201ENST00000507275 550 ntBASIC13.91□□□□□ -0.18
FOXA2Q9Y261 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 PRR29-207ENST00000580752 458 ntTSL 3 BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 AC138894.3-201ENST00000603787 634 ntBASIC13.91□□□□□ -0.18
FOXA2Q9Y261 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 TNRC18P3-201ENST00000441896 2691 ntBASIC13.91□□□□□ -0.18
FOXA2Q9Y261 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA2Q9Y261 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
FOXA2Q9Y261 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms