Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
VPS54Q9P1Q0 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS54Q9P1Q0 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS54Q9P1Q0 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS54Q9P1Q0 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
VPS54Q9P1Q0 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
VPS54Q9P1Q0 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS54Q9P1Q0 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS54Q9P1Q0 AC073621.1-201ENST00000392730 636 ntBASIC19.78■□□□□ 0.76
VPS54Q9P1Q0 AL031284.1-201ENST00000419297 478 ntBASIC19.78■□□□□ 0.76
VPS54Q9P1Q0 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS54Q9P1Q0 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS54Q9P1Q0 AC006557.2-201ENST00000592985 1240 ntBASIC19.78■□□□□ 0.76
VPS54Q9P1Q0 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.78■□□□□ 0.76
VPS54Q9P1Q0 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC19.78■□□□□ 0.76
VPS54Q9P1Q0 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS54Q9P1Q0 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS54Q9P1Q0 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS54Q9P1Q0 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS54Q9P1Q0 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS54Q9P1Q0 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS54Q9P1Q0 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS54Q9P1Q0 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS54Q9P1Q0 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS54Q9P1Q0 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS54Q9P1Q0 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS54Q9P1Q0 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS54Q9P1Q0 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS54Q9P1Q0 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
VPS54Q9P1Q0 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS54Q9P1Q0 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS54Q9P1Q0 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS54Q9P1Q0 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS54Q9P1Q0 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC19.77■□□□□ 0.76
VPS54Q9P1Q0 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.77■□□□□ 0.76
VPS54Q9P1Q0 PTCHD3P3-201ENST00000403073 906 ntBASIC19.77■□□□□ 0.76
VPS54Q9P1Q0 NABP1-203ENST00000409510 843 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS54Q9P1Q0 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC19.77■□□□□ 0.76
VPS54Q9P1Q0 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS54Q9P1Q0 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS54Q9P1Q0 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS54Q9P1Q0 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19.76■□□□□ 0.75
VPS54Q9P1Q0 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 AC243591.1-201ENST00000452967 1364 ntBASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 AC105339.3-201ENST00000560043 636 ntBASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 KLK8-205ENST00000593490 267 ntTSL 3 BASIC19.75■□□□□ 0.75
VPS54Q9P1Q0 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms