Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TDP1Q9NUW8 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.6■□□□□ 0.41
TDP1Q9NUW8 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TDP1Q9NUW8 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.6■□□□□ 0.41
TDP1Q9NUW8 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.6■□□□□ 0.41
TDP1Q9NUW8 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.6■□□□□ 0.41
TDP1Q9NUW8 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TDP1Q9NUW8 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.6■□□□□ 0.41
TDP1Q9NUW8 HMGA1P7-201ENST00000406908 502 ntBASIC17.6■□□□□ 0.41
TDP1Q9NUW8 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TDP1Q9NUW8 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.6■□□□□ 0.41
TDP1Q9NUW8 AC025678.2-201ENST00000562061 970 ntBASIC17.6■□□□□ 0.41
TDP1Q9NUW8 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TDP1Q9NUW8 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TDP1Q9NUW8 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TDP1Q9NUW8 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
TDP1Q9NUW8 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TDP1Q9NUW8 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TDP1Q9NUW8 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
TDP1Q9NUW8 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TDP1Q9NUW8 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TDP1Q9NUW8 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TDP1Q9NUW8 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 AC012569.1-201ENST00000591191 1524 ntBASIC17.59■□□□□ 0.41
TDP1Q9NUW8 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 SPDYE11-202ENST00000450699 704 ntBASIC17.59■□□□□ 0.41
TDP1Q9NUW8 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 SPDYE9P-201ENST00000570642 692 ntBASIC17.59■□□□□ 0.41
TDP1Q9NUW8 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 SPDYE10P-202ENST00000612005 668 ntBASIC17.59■□□□□ 0.41
TDP1Q9NUW8 SPDYE8P-202ENST00000612377 668 ntBASIC17.59■□□□□ 0.41
TDP1Q9NUW8 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 AC008764.6-201ENST00000595909 2069 ntBASIC17.59■□□□□ 0.41
TDP1Q9NUW8 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TDP1Q9NUW8 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TDP1Q9NUW8 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
TDP1Q9NUW8 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.58■□□□□ 0.41
TDP1Q9NUW8 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.58■□□□□ 0.41
TDP1Q9NUW8 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TDP1Q9NUW8 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
TDP1Q9NUW8 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
TDP1Q9NUW8 EGFEM1P-202ENST00000431685 1563 ntBASIC17.58■□□□□ 0.41
TDP1Q9NUW8 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TDP1Q9NUW8 AC016396.2-201ENST00000562575 1417 ntBASIC17.58■□□□□ 0.41
TDP1Q9NUW8 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TDP1Q9NUW8 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.58■□□□□ 0.41
TDP1Q9NUW8 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TDP1Q9NUW8 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TDP1Q9NUW8 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC17.58■□□□□ 0.4
TDP1Q9NUW8 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.58■□□□□ 0.4
TDP1Q9NUW8 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.58■□□□□ 0.4
TDP1Q9NUW8 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.58■□□□□ 0.4
TDP1Q9NUW8 KRT8P48-201ENST00000515599 1220 ntBASIC17.58■□□□□ 0.4
TDP1Q9NUW8 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TDP1Q9NUW8 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.58■□□□□ 0.4
TDP1Q9NUW8 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
TDP1Q9NUW8 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TDP1Q9NUW8 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
TDP1Q9NUW8 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.58■□□□□ 0.4
TDP1Q9NUW8 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.58■□□□□ 0.4
TDP1Q9NUW8 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
TDP1Q9NUW8 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.58■□□□□ 0.4
TDP1Q9NUW8 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TDP1Q9NUW8 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.58■□□□□ 0.4
TDP1Q9NUW8 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TDP1Q9NUW8 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
TDP1Q9NUW8 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TDP1Q9NUW8 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.57■□□□□ 0.4
TDP1Q9NUW8 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms