Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC16.77■□□□□ 0.27
CCDC28BQ9BUN5 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.27
CCDC28BQ9BUN5 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 SNORA78-201ENST00000459373 127 ntBASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28BQ9BUN5 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 AC024909.3-201ENST00000611513 2257 ntBASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 FAM8A6P-201ENST00000407496 1135 ntBASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 GPR32P1-201ENST00000601788 811 ntBASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 AL023973.1-201ENST00000624619 620 ntBASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 C1R-202ENST00000536053 2347 ntTSL 2 BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.75■□□□□ 0.27
CCDC28BQ9BUN5 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC28BQ9BUN5 AC140113.3-201ENST00000605663 199 ntBASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms