Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
COL12A1Q99715 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL12A1Q99715 AC116562.4-201ENST00000641316 2276 ntBASIC14.83□□□□□ -0.04
COL12A1Q99715 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC14.83□□□□□ -0.04
COL12A1Q99715 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL12A1Q99715 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL12A1Q99715 AC135776.1-201ENST00000319817 2481 ntBASIC14.83□□□□□ -0.04
COL12A1Q99715 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL12A1Q99715 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL12A1Q99715 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC14.83□□□□□ -0.04
COL12A1Q99715 EMC4-209ENST00000559421 497 ntTSL 2 BASIC14.83□□□□□ -0.04
COL12A1Q99715 MIR4722-201ENST00000578292 60 ntBASIC14.83□□□□□ -0.04
COL12A1Q99715 MIR3615-201ENST00000581999 87 ntBASIC14.83□□□□□ -0.04
COL12A1Q99715 AC243960.2-201ENST00000600996 747 ntBASIC14.83□□□□□ -0.04
COL12A1Q99715 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC14.83□□□□□ -0.04
COL12A1Q99715 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
COL12A1Q99715 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL12A1Q99715 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC14.83□□□□□ -0.04
COL12A1Q99715 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC14.83□□□□□ -0.04
COL12A1Q99715 PDIA3P1-201ENST00000471856 1510 ntBASIC14.83□□□□□ -0.04
COL12A1Q99715 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL12A1Q99715 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL12A1Q99715 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL12A1Q99715 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL12A1Q99715 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL12A1Q99715 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC14.82□□□□□ -0.04
COL12A1Q99715 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL12A1Q99715 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.82□□□□□ -0.04
COL12A1Q99715 WASH4P-201ENST00000564273 1246 ntBASIC14.82□□□□□ -0.04
COL12A1Q99715 AC007967.4-201ENST00000614700 386 ntBASIC14.82□□□□□ -0.04
COL12A1Q99715 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL12A1Q99715 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
COL12A1Q99715 REXO1L11P-201ENST00000620964 1927 ntBASIC14.82□□□□□ -0.04
COL12A1Q99715 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC14.82□□□□□ -0.04
COL12A1Q99715 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL12A1Q99715 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL12A1Q99715 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL12A1Q99715 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC14.82□□□□□ -0.04
COL12A1Q99715 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL12A1Q99715 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC14.82□□□□□ -0.04
COL12A1Q99715 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.82□□□□□ -0.04
COL12A1Q99715 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL12A1Q99715 AL135999.2-201ENST00000622438 1686 ntBASIC14.82□□□□□ -0.04
COL12A1Q99715 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC14.82□□□□□ -0.04
COL12A1Q99715 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
COL12A1Q99715 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC14.82□□□□□ -0.04
COL12A1Q99715 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC14.82□□□□□ -0.04
COL12A1Q99715 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL12A1Q99715 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC14.82□□□□□ -0.04
COL12A1Q99715 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL12A1Q99715 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL12A1Q99715 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL12A1Q99715 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL12A1Q99715 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC14.81□□□□□ -0.04
COL12A1Q99715 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL12A1Q99715 AC087499.6-201ENST00000411576 835 ntBASIC14.81□□□□□ -0.04
COL12A1Q99715 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL12A1Q99715 AC008267.7-201ENST00000624570 1194 ntBASIC14.81□□□□□ -0.04
COL12A1Q99715 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL12A1Q99715 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.81□□□□□ -0.04
COL12A1Q99715 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL12A1Q99715 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC14.81□□□□□ -0.04
COL12A1Q99715 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL12A1Q99715 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL12A1Q99715 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL12A1Q99715 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL12A1Q99715 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL12A1Q99715 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL12A1Q99715 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL12A1Q99715 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL12A1Q99715 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL12A1Q99715 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC14.81□□□□□ -0.04
COL12A1Q99715 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC14.81□□□□□ -0.04
COL12A1Q99715 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.81□□□□□ -0.04
COL12A1Q99715 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC14.81□□□□□ -0.04
COL12A1Q99715 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.81□□□□□ -0.04
COL12A1Q99715 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.81□□□□□ -0.04
COL12A1Q99715 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC14.81□□□□□ -0.04
COL12A1Q99715 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL12A1Q99715 AC018665.1-201ENST00000622927 1362 ntBASIC14.81□□□□□ -0.04
COL12A1Q99715 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL12A1Q99715 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
COL12A1Q99715 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC14.81□□□□□ -0.04
COL12A1Q99715 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC14.81□□□□□ -0.04
COL12A1Q99715 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL12A1Q99715 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
COL12A1Q99715 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC14.81□□□□□ -0.04
COL12A1Q99715 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC14.81□□□□□ -0.04
COL12A1Q99715 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL12A1Q99715 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.81□□□□□ -0.04
COL12A1Q99715 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL12A1Q99715 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL12A1Q99715 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL12A1Q99715 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
COL12A1Q99715 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC14.8□□□□□ -0.04
COL12A1Q99715 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
COL12A1Q99715 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL12A1Q99715 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.8□□□□□ -0.04
COL12A1Q99715 CDC14C-201ENST00000428251 1719 ntBASIC14.8□□□□□ -0.04
COL12A1Q99715 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms