Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LRCH3Q96II8 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
LRCH3Q96II8 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LRCH3Q96II8 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18.5■□□□□ 0.55
LRCH3Q96II8 TPI1-206ENST00000488464 791 ntTSL 5 BASIC18.5■□□□□ 0.55
LRCH3Q96II8 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC18.5■□□□□ 0.55
LRCH3Q96II8 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC18.5■□□□□ 0.55
LRCH3Q96II8 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC18.5■□□□□ 0.55
LRCH3Q96II8 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
LRCH3Q96II8 AL512343.1-201ENST00000605837 169 ntBASIC18.5■□□□□ 0.55
LRCH3Q96II8 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC18.5■□□□□ 0.55
LRCH3Q96II8 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.5■□□□□ 0.55
LRCH3Q96II8 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LRCH3Q96II8 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LRCH3Q96II8 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC18.5■□□□□ 0.55
LRCH3Q96II8 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LRCH3Q96II8 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LRCH3Q96II8 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.5■□□□□ 0.55
LRCH3Q96II8 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LRCH3Q96II8 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LRCH3Q96II8 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
LRCH3Q96II8 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.5■□□□□ 0.55
LRCH3Q96II8 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LRCH3Q96II8 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
LRCH3Q96II8 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
LRCH3Q96II8 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.49■□□□□ 0.55
LRCH3Q96II8 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC18.49■□□□□ 0.55
LRCH3Q96II8 STK33P1-201ENST00000423835 1218 ntBASIC18.49■□□□□ 0.55
LRCH3Q96II8 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC18.49■□□□□ 0.55
LRCH3Q96II8 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC18.49■□□□□ 0.55
LRCH3Q96II8 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.49■□□□□ 0.55
LRCH3Q96II8 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC18.49■□□□□ 0.55
LRCH3Q96II8 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC18.49■□□□□ 0.55
LRCH3Q96II8 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18.49■□□□□ 0.55
LRCH3Q96II8 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
LRCH3Q96II8 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LRCH3Q96II8 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
LRCH3Q96II8 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.49■□□□□ 0.55
LRCH3Q96II8 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
LRCH3Q96II8 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
LRCH3Q96II8 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LRCH3Q96II8 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.48■□□□□ 0.55
LRCH3Q96II8 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.48■□□□□ 0.55
LRCH3Q96II8 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LRCH3Q96II8 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
LRCH3Q96II8 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LRCH3Q96II8 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.48■□□□□ 0.55
LRCH3Q96II8 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LRCH3Q96II8 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LRCH3Q96II8 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LRCH3Q96II8 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LRCH3Q96II8 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LRCH3Q96II8 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
LRCH3Q96II8 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC18.48■□□□□ 0.55
LRCH3Q96II8 IFNA4-201ENST00000421715 978 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
LRCH3Q96II8 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC18.48■□□□□ 0.55
LRCH3Q96II8 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC18.48■□□□□ 0.55
LRCH3Q96II8 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC18.48■□□□□ 0.55
LRCH3Q96II8 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
LRCH3Q96II8 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LRCH3Q96II8 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.48■□□□□ 0.55
LRCH3Q96II8 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.48■□□□□ 0.55
LRCH3Q96II8 AC109462.3-201ENST00000573934 613 ntBASIC18.48■□□□□ 0.55
LRCH3Q96II8 SPDYE12P-201ENST00000618416 771 ntBASIC18.48■□□□□ 0.55
LRCH3Q96II8 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC18.48■□□□□ 0.55
LRCH3Q96II8 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
LRCH3Q96II8 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.48■□□□□ 0.55
LRCH3Q96II8 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
LRCH3Q96II8 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LRCH3Q96II8 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
LRCH3Q96II8 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
LRCH3Q96II8 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
LRCH3Q96II8 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
LRCH3Q96II8 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
LRCH3Q96II8 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
LRCH3Q96II8 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.48■□□□□ 0.55
LRCH3Q96II8 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
LRCH3Q96II8 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms