Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC60Q8IWA6 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC60Q8IWA6 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC60Q8IWA6 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
CCDC60Q8IWA6 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.02■□□□□ 0.63
CCDC60Q8IWA6 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.02■□□□□ 0.63
CCDC60Q8IWA6 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC60Q8IWA6 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC60Q8IWA6 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC60Q8IWA6 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
CCDC60Q8IWA6 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC60Q8IWA6 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 CD82-202ENST00000342935 967 ntTSL 5 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 AC211486.1-202ENST00000416371 468 ntBASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 AC211476.1-201ENST00000503899 468 ntBASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 MMP17-203ENST00000535004 719 ntTSL 3 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 RPL28-209ENST00000560055 670 ntTSL 3 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC60Q8IWA6 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC60Q8IWA6 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19■□□□□ 0.63
CCDC60Q8IWA6 FRMD8P1-201ENST00000440433 1524 ntBASIC19■□□□□ 0.63
CCDC60Q8IWA6 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC60Q8IWA6 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC60Q8IWA6 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC60Q8IWA6 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC60Q8IWA6 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19■□□□□ 0.63
CCDC60Q8IWA6 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC60Q8IWA6 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC60Q8IWA6 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC19■□□□□ 0.63
CCDC60Q8IWA6 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC60Q8IWA6 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC60Q8IWA6 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC19■□□□□ 0.63
CCDC60Q8IWA6 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC19■□□□□ 0.63
CCDC60Q8IWA6 FAM58CP-201ENST00000435741 640 ntBASIC19■□□□□ 0.63
CCDC60Q8IWA6 MKNK2P1-201ENST00000437526 628 ntBASIC19■□□□□ 0.63
CCDC60Q8IWA6 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CCDC60Q8IWA6 DNAJB3-202ENST00000449667 1266 ntBASIC19■□□□□ 0.63
CCDC60Q8IWA6 AC092183.1-201ENST00000469884 875 ntBASIC19■□□□□ 0.63
CCDC60Q8IWA6 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC19■□□□□ 0.63
CCDC60Q8IWA6 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC19■□□□□ 0.63
CCDC60Q8IWA6 DUX4L17-201ENST00000557360 1267 ntBASIC19■□□□□ 0.63
CCDC60Q8IWA6 AL031432.2-201ENST00000566714 459 ntBASIC19■□□□□ 0.63
CCDC60Q8IWA6 AL928711.1-201ENST00000570165 459 ntBASIC19■□□□□ 0.63
CCDC60Q8IWA6 AP001160.2-201ENST00000596071 487 ntBASIC19■□□□□ 0.63
CCDC60Q8IWA6 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC19■□□□□ 0.63
CCDC60Q8IWA6 AC068137.2-201ENST00000605408 478 ntBASIC19■□□□□ 0.63
CCDC60Q8IWA6 AC091812.2-201ENST00000619081 385 ntBASIC19■□□□□ 0.63
CCDC60Q8IWA6 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC60Q8IWA6 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC60Q8IWA6 HARS-203ENST00000431330 1774 ntTSL 2 BASIC19■□□□□ 0.63
CCDC60Q8IWA6 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CCDC60Q8IWA6 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CCDC60Q8IWA6 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CCDC60Q8IWA6 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC60Q8IWA6 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19■□□□□ 0.63
CCDC60Q8IWA6 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC60Q8IWA6 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19■□□□□ 0.63
CCDC60Q8IWA6 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC60Q8IWA6 REM2-202ENST00000536884 1331 ntTSL 2 BASIC19■□□□□ 0.63
CCDC60Q8IWA6 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC60Q8IWA6 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CCDC60Q8IWA6 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC60Q8IWA6 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC60Q8IWA6 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC60Q8IWA6 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CCDC60Q8IWA6 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC18.99■□□□□ 0.63
CCDC60Q8IWA6 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC60Q8IWA6 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms