Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SYNE3Q6ZMZ3 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 LINC00982-205ENST00000420957 435 ntBASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 FAAHP1-202ENST00000446499 1238 ntBASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 AL121912.1-201ENST00000603683 238 ntBASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SYNE3Q6ZMZ3 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 NCF1C-201ENST00000438382 1427 ntBASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 AC073648.2-201ENST00000510116 352 ntBASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC20.23■□□□□ 0.83
SYNE3Q6ZMZ3 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 AC064862.7-201ENST00000604520 867 ntBASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 AL589182.2-201ENST00000619332 1049 ntBASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE3Q6ZMZ3 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms