Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
KRT39Q6A163 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
KRT39Q6A163 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
KRT39Q6A163 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
KRT39Q6A163 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC18.56■□□□□ 0.56
KRT39Q6A163 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
KRT39Q6A163 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
KRT39Q6A163 AD000864.1-201ENST00000624076 2295 ntBASIC18.56■□□□□ 0.56
KRT39Q6A163 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
KRT39Q6A163 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
KRT39Q6A163 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
KRT39Q6A163 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.55■□□□□ 0.56
KRT39Q6A163 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
KRT39Q6A163 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
KRT39Q6A163 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
KRT39Q6A163 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
KRT39Q6A163 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
KRT39Q6A163 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
KRT39Q6A163 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
KRT39Q6A163 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18.55■□□□□ 0.56
KRT39Q6A163 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
KRT39Q6A163 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
KRT39Q6A163 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC18.55■□□□□ 0.56
KRT39Q6A163 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
KRT39Q6A163 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
KRT39Q6A163 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.55■□□□□ 0.56
KRT39Q6A163 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
KRT39Q6A163 LAGE3P1-201ENST00000425356 484 ntBASIC18.55■□□□□ 0.56
KRT39Q6A163 FAAHP1-202ENST00000446499 1238 ntBASIC18.55■□□□□ 0.56
KRT39Q6A163 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
KRT39Q6A163 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.55■□□□□ 0.56
KRT39Q6A163 AC107918.4-202ENST00000641623 219 ntBASIC18.55■□□□□ 0.56
KRT39Q6A163 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
KRT39Q6A163 AC092068.3-201ENST00000587894 2016 ntBASIC18.55■□□□□ 0.56
KRT39Q6A163 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
KRT39Q6A163 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
KRT39Q6A163 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
KRT39Q6A163 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
KRT39Q6A163 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
KRT39Q6A163 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.55■□□□□ 0.56
KRT39Q6A163 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
KRT39Q6A163 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
KRT39Q6A163 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
KRT39Q6A163 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
KRT39Q6A163 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.54■□□□□ 0.56
KRT39Q6A163 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.54■□□□□ 0.56
KRT39Q6A163 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
KRT39Q6A163 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
KRT39Q6A163 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
KRT39Q6A163 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
KRT39Q6A163 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.54■□□□□ 0.56
KRT39Q6A163 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.54■□□□□ 0.56
KRT39Q6A163 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.54■□□□□ 0.56
KRT39Q6A163 AC079781.3-201ENST00000449110 356 ntBASIC18.54■□□□□ 0.56
KRT39Q6A163 FAM197Y8-203ENST00000450145 560 ntBASIC18.54■□□□□ 0.56
KRT39Q6A163 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.54■□□□□ 0.56
KRT39Q6A163 RNPS1P1-201ENST00000507437 918 ntBASIC18.54■□□□□ 0.56
KRT39Q6A163 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.54■□□□□ 0.56
KRT39Q6A163 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.54■□□□□ 0.56
KRT39Q6A163 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.54■□□□□ 0.56
KRT39Q6A163 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.54■□□□□ 0.56
KRT39Q6A163 VPS51-217ENST00000639871 243 ntTSL 5 BASIC18.54■□□□□ 0.56
KRT39Q6A163 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.54■□□□□ 0.56
KRT39Q6A163 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC18.54■□□□□ 0.56
KRT39Q6A163 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
KRT39Q6A163 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.54■□□□□ 0.56
KRT39Q6A163 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
KRT39Q6A163 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.53■□□□□ 0.56
KRT39Q6A163 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
KRT39Q6A163 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.53■□□□□ 0.56
KRT39Q6A163 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
KRT39Q6A163 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
KRT39Q6A163 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
KRT39Q6A163 AP002414.1-201ENST00000391405 1147 ntBASIC18.53■□□□□ 0.56
KRT39Q6A163 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
KRT39Q6A163 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
KRT39Q6A163 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.53■□□□□ 0.56
KRT39Q6A163 RPS2P1-201ENST00000434010 821 ntBASIC18.53■□□□□ 0.56
KRT39Q6A163 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.53■□□□□ 0.56
KRT39Q6A163 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.53■□□□□ 0.56
KRT39Q6A163 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
KRT39Q6A163 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
KRT39Q6A163 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.53■□□□□ 0.56
KRT39Q6A163 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.53■□□□□ 0.56
KRT39Q6A163 AC006557.2-201ENST00000592985 1240 ntBASIC18.53■□□□□ 0.56
KRT39Q6A163 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.53■□□□□ 0.56
KRT39Q6A163 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.53■□□□□ 0.56
KRT39Q6A163 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC18.53■□□□□ 0.56
KRT39Q6A163 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
KRT39Q6A163 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
KRT39Q6A163 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
KRT39Q6A163 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
KRT39Q6A163 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
KRT39Q6A163 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
KRT39Q6A163 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
KRT39Q6A163 PCDHA12-202ENST00000613593 2588 ntBASIC18.52■□□□□ 0.56
KRT39Q6A163 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC18.52■□□□□ 0.56
KRT39Q6A163 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
KRT39Q6A163 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
KRT39Q6A163 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms