Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.88■□□□□ 0.77
SF3A1Q15459 FUT8-AS1-201ENST00000621019 1521 ntBASIC19.88■□□□□ 0.77
SF3A1Q15459 TP73-AS1-210ENST00000637775 1455 ntBASIC19.88■□□□□ 0.77
SF3A1Q15459 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SF3A1Q15459 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
SF3A1Q15459 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.88■□□□□ 0.77
SF3A1Q15459 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SF3A1Q15459 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SF3A1Q15459 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.88■□□□□ 0.77
SF3A1Q15459 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC19.88■□□□□ 0.77
SF3A1Q15459 DANCR-204ENST00000444958 709 ntTSL 3 BASIC19.88■□□□□ 0.77
SF3A1Q15459 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC19.88■□□□□ 0.77
SF3A1Q15459 MPI-205ENST00000562606 1052 ntTSL 3 BASIC19.88■□□□□ 0.77
SF3A1Q15459 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SF3A1Q15459 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC19.88■□□□□ 0.77
SF3A1Q15459 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.88■□□□□ 0.77
SF3A1Q15459 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.88■□□□□ 0.77
SF3A1Q15459 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SF3A1Q15459 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC19.88■□□□□ 0.77
SF3A1Q15459 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SF3A1Q15459 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SF3A1Q15459 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SF3A1Q15459 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC19.88■□□□□ 0.77
SF3A1Q15459 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SF3A1Q15459 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC19.88■□□□□ 0.77
SF3A1Q15459 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SF3A1Q15459 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SF3A1Q15459 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC19.87■□□□□ 0.77
SF3A1Q15459 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC19.87■□□□□ 0.77
SF3A1Q15459 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SF3A1Q15459 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
SF3A1Q15459 ENSA-206ENST00000361631 725 ntTSL 2 BASIC19.87■□□□□ 0.77
SF3A1Q15459 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SF3A1Q15459 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SF3A1Q15459 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.87■□□□□ 0.77
SF3A1Q15459 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
SF3A1Q15459 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.87■□□□□ 0.77
SF3A1Q15459 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SF3A1Q15459 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SF3A1Q15459 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SF3A1Q15459 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
SF3A1Q15459 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SF3A1Q15459 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SF3A1Q15459 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SF3A1Q15459 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC19.86■□□□□ 0.77
SF3A1Q15459 AC005915.1-201ENST00000624912 2018 ntBASIC19.86■□□□□ 0.77
SF3A1Q15459 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
SF3A1Q15459 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC19.86■□□□□ 0.77
SF3A1Q15459 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC19.86■□□□□ 0.77
SF3A1Q15459 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SF3A1Q15459 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
SF3A1Q15459 AC132938.5-201ENST00000624980 1813 ntBASIC19.86■□□□□ 0.77
SF3A1Q15459 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SF3A1Q15459 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SF3A1Q15459 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SF3A1Q15459 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.86■□□□□ 0.77
SF3A1Q15459 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SF3A1Q15459 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SF3A1Q15459 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC19.86■□□□□ 0.77
SF3A1Q15459 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SF3A1Q15459 LINC00265-3P-201ENST00000447588 903 ntBASIC19.86■□□□□ 0.77
SF3A1Q15459 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
SF3A1Q15459 KRT17P6-201ENST00000453795 1220 ntBASIC19.86■□□□□ 0.77
SF3A1Q15459 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.86■□□□□ 0.77
SF3A1Q15459 CDV3-207ENST00000508481 661 ntTSL 3 BASIC19.86■□□□□ 0.77
SF3A1Q15459 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.86■□□□□ 0.77
SF3A1Q15459 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
SF3A1Q15459 MIR3180-1-201ENST00000580374 94 ntBASIC19.86■□□□□ 0.77
SF3A1Q15459 MIR3180-3-201ENST00000584616 94 ntBASIC19.86■□□□□ 0.77
SF3A1Q15459 BNIP3P18-201ENST00000593976 575 ntBASIC19.86■□□□□ 0.77
SF3A1Q15459 Z69720.1-201ENST00000601483 472 ntBASIC19.86■□□□□ 0.77
SF3A1Q15459 AD001527.2-201ENST00000622994 785 ntBASIC19.86■□□□□ 0.77
SF3A1Q15459 AP000550.4-202ENST00000639755 178 ntBASIC19.86■□□□□ 0.77
SF3A1Q15459 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
SF3A1Q15459 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC19.86■□□□□ 0.77
SF3A1Q15459 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SF3A1Q15459 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.86■□□□□ 0.77
SF3A1Q15459 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SF3A1Q15459 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SF3A1Q15459 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SF3A1Q15459 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SF3A1Q15459 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC19.86■□□□□ 0.77
SF3A1Q15459 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SF3A1Q15459 NSUN5P1-202ENST00000421140 1535 ntBASIC19.86■□□□□ 0.77
SF3A1Q15459 NSUN5P2-203ENST00000457352 1529 ntBASIC19.86■□□□□ 0.77
SF3A1Q15459 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SF3A1Q15459 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SF3A1Q15459 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SF3A1Q15459 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SF3A1Q15459 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SF3A1Q15459 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SF3A1Q15459 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SF3A1Q15459 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC19.85■□□□□ 0.77
SF3A1Q15459 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC19.85■□□□□ 0.77
SF3A1Q15459 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
SF3A1Q15459 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SF3A1Q15459 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SF3A1Q15459 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SF3A1Q15459 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SF3A1Q15459 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms