Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM4P67936 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
TPM4P67936 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM4P67936 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
TPM4P67936 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM4P67936 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TPM4P67936 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM4P67936 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM4P67936 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TPM4P67936 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM4P67936 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TPM4P67936 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM4P67936 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM4P67936 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM4P67936 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM4P67936 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.31■□□□□ 0.68
TPM4P67936 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TPM4P67936 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.31■□□□□ 0.68
TPM4P67936 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.31■□□□□ 0.68
TPM4P67936 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.31■□□□□ 0.68
TPM4P67936 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.31■□□□□ 0.68
TPM4P67936 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TPM4P67936 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC19.31■□□□□ 0.68
TPM4P67936 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
TPM4P67936 KRT8P9-201ENST00000558927 1449 ntBASIC19.31■□□□□ 0.68
TPM4P67936 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM4P67936 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM4P67936 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM4P67936 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.31■□□□□ 0.68
TPM4P67936 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC19.31■□□□□ 0.68
TPM4P67936 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TPM4P67936 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TPM4P67936 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TPM4P67936 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
TPM4P67936 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 AC097374.2-201ENST00000618617 1306 ntBASIC19.3■□□□□ 0.68
TPM4P67936 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 WT1-209ENST00000530998 2421 ntTSL 2 BASIC19.3■□□□□ 0.68
TPM4P67936 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
TPM4P67936 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.3■□□□□ 0.68
TPM4P67936 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19.3■□□□□ 0.68
TPM4P67936 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.3■□□□□ 0.68
TPM4P67936 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.3■□□□□ 0.68
TPM4P67936 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.3■□□□□ 0.68
TPM4P67936 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
TPM4P67936 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.3■□□□□ 0.68
TPM4P67936 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.3■□□□□ 0.68
TPM4P67936 AP003733.1-201ENST00000491725 852 ntBASIC19.3■□□□□ 0.68
TPM4P67936 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.3■□□□□ 0.68
TPM4P67936 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.3■□□□□ 0.68
TPM4P67936 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC19.3■□□□□ 0.68
TPM4P67936 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.3■□□□□ 0.68
TPM4P67936 AC079602.3-201ENST00000623931 403 ntBASIC19.3■□□□□ 0.68
TPM4P67936 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC19.3■□□□□ 0.68
TPM4P67936 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
TPM4P67936 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC19.3■□□□□ 0.68
TPM4P67936 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC19.3■□□□□ 0.68
TPM4P67936 AL353692.3-201ENST00000407031 1396 ntBASIC19.3■□□□□ 0.68
TPM4P67936 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC19.3■□□□□ 0.68
TPM4P67936 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC19.3■□□□□ 0.68
TPM4P67936 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC19.3■□□□□ 0.68
TPM4P67936 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
TPM4P67936 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TPM4P67936 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM4P67936 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TPM4P67936 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM4P67936 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM4P67936 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.29■□□□□ 0.68
TPM4P67936 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM4P67936 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TPM4P67936 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM4P67936 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM4P67936 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM4P67936 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM4P67936 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC19.29■□□□□ 0.68
TPM4P67936 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TPM4P67936 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TPM4P67936 RNF216P1-203ENST00000404404 2427 ntBASIC19.29■□□□□ 0.68
TPM4P67936 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TPM4P67936 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms