Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.4
CDH4P55283 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDH4P55283 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.52■□□□□ 0.4
CDH4P55283 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.52■□□□□ 0.4
CDH4P55283 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDH4P55283 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.52■□□□□ 0.4
CDH4P55283 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDH4P55283 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CDH4P55283 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDH4P55283 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.52■□□□□ 0.4
CDH4P55283 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDH4P55283 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDH4P55283 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDH4P55283 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDH4P55283 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.52■□□□□ 0.4
CDH4P55283 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDH4P55283 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.52■□□□□ 0.4
CDH4P55283 MIR940-201ENST00000401276 94 ntBASIC17.52■□□□□ 0.4
CDH4P55283 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
CDH4P55283 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CDH4P55283 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.4
CDH4P55283 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.52■□□□□ 0.4
CDH4P55283 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.52■□□□□ 0.4
CDH4P55283 POLD2P1-201ENST00000511220 997 ntBASIC17.52■□□□□ 0.4
CDH4P55283 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.52■□□□□ 0.4
CDH4P55283 AC124947.2-201ENST00000547118 1133 ntBASIC17.52■□□□□ 0.4
CDH4P55283 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.52■□□□□ 0.4
CDH4P55283 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CDH4P55283 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDH4P55283 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.52■□□□□ 0.4
CDH4P55283 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDH4P55283 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.52■□□□□ 0.4
CDH4P55283 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
CDH4P55283 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDH4P55283 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CDH4P55283 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CDH4P55283 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.52■□□□□ 0.39
CDH4P55283 AC002310.6-201ENST00000624451 1377 ntBASIC17.52■□□□□ 0.39
CDH4P55283 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CDH4P55283 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CDH4P55283 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDH4P55283 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDH4P55283 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.51■□□□□ 0.39
CDH4P55283 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.51■□□□□ 0.39
CDH4P55283 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
CDH4P55283 AC129492.6-201ENST00000611383 1305 ntBASIC17.51■□□□□ 0.39
CDH4P55283 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CDH4P55283 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDH4P55283 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CDH4P55283 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDH4P55283 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CDH4P55283 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDH4P55283 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CDH4P55283 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDH4P55283 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CDH4P55283 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDH4P55283 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CDH4P55283 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CDH4P55283 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.51■□□□□ 0.39
CDH4P55283 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.51■□□□□ 0.39
CDH4P55283 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDH4P55283 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.51■□□□□ 0.39
CDH4P55283 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.51■□□□□ 0.39
CDH4P55283 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.51■□□□□ 0.39
CDH4P55283 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDH4P55283 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDH4P55283 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDH4P55283 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDH4P55283 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.51■□□□□ 0.39
CDH4P55283 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.51■□□□□ 0.39
CDH4P55283 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CDH4P55283 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CDH4P55283 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.5■□□□□ 0.39
CDH4P55283 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.5■□□□□ 0.39
CDH4P55283 PMS2P7-201ENST00000506558 1336 ntBASIC17.5■□□□□ 0.39
CDH4P55283 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH4P55283 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CDH4P55283 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH4P55283 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.5■□□□□ 0.39
CDH4P55283 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.5■□□□□ 0.39
CDH4P55283 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.5■□□□□ 0.39
CDH4P55283 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH4P55283 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH4P55283 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH4P55283 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH4P55283 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CDH4P55283 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH4P55283 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH4P55283 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH4P55283 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CDH4P55283 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CDH4P55283 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.5■□□□□ 0.39
CDH4P55283 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.5■□□□□ 0.39
CDH4P55283 IGLL3P-201ENST00000412472 434 ntBASIC17.5■□□□□ 0.39
CDH4P55283 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CDH4P55283 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.5■□□□□ 0.39
CDH4P55283 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.5■□□□□ 0.39
CDH4P55283 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.5■□□□□ 0.39
CDH4P55283 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CDH4P55283 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms