Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 AC092919.2-201ENST00000623631 1645 ntBASIC16.96■□□□□ 0.3
LIMK1P53667 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.95■□□□□ 0.3
LIMK1P53667 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMK1P53667 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMK1P53667 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LIMK1P53667 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMK1P53667 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.95■□□□□ 0.3
LIMK1P53667 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.95■□□□□ 0.3
LIMK1P53667 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.95■□□□□ 0.3
LIMK1P53667 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.95■□□□□ 0.3
LIMK1P53667 AC022494.1-201ENST00000466044 728 ntBASIC16.95■□□□□ 0.3
LIMK1P53667 RN7SL589P-201ENST00000481268 310 ntBASIC16.95■□□□□ 0.3
LIMK1P53667 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LIMK1P53667 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LIMK1P53667 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC16.95■□□□□ 0.3
LIMK1P53667 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
LIMK1P53667 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LIMK1P53667 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.95■□□□□ 0.3
LIMK1P53667 COBL-210ENST00000632460 1941 ntTSL 5 BASIC16.95■□□□□ 0.3
LIMK1P53667 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.95■□□□□ 0.3
LIMK1P53667 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMK1P53667 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.95■□□□□ 0.3
LIMK1P53667 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LIMK1P53667 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
LIMK1P53667 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMK1P53667 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.95■□□□□ 0.3
LIMK1P53667 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.94■□□□□ 0.3
LIMK1P53667 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
LIMK1P53667 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMK1P53667 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMK1P53667 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.94■□□□□ 0.3
LIMK1P53667 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.94■□□□□ 0.3
LIMK1P53667 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIMK1P53667 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMK1P53667 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMK1P53667 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMK1P53667 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMK1P53667 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMK1P53667 AL671277.1-201ENST00000429656 993 ntBASIC16.94■□□□□ 0.3
LIMK1P53667 AC125807.1-201ENST00000483097 614 ntBASIC16.94■□□□□ 0.3
LIMK1P53667 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMK1P53667 SLC25A39P2-201ENST00000537614 270 ntBASIC16.94■□□□□ 0.3
LIMK1P53667 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.94■□□□□ 0.3
LIMK1P53667 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.94■□□□□ 0.3
LIMK1P53667 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC16.94■□□□□ 0.3
LIMK1P53667 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.94■□□□□ 0.3
LIMK1P53667 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.94■□□□□ 0.3
LIMK1P53667 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMK1P53667 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
LIMK1P53667 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.94■□□□□ 0.3
LIMK1P53667 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMK1P53667 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMK1P53667 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.94■□□□□ 0.3
LIMK1P53667 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMK1P53667 STX6-204ENST00000542060 4809 ntTSL 2 BASIC16.94■□□□□ 0.3
LIMK1P53667 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.94■□□□□ 0.3
LIMK1P53667 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIMK1P53667 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMK1P53667 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
LIMK1P53667 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.94■□□□□ 0.3
LIMK1P53667 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMK1P53667 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.94■□□□□ 0.3
LIMK1P53667 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
LIMK1P53667 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMK1P53667 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMK1P53667 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMK1P53667 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIMK1P53667 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.93■□□□□ 0.3
LIMK1P53667 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMK1P53667 AC134043.2-201ENST00000624206 2238 ntBASIC16.93■□□□□ 0.3
LIMK1P53667 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
LIMK1P53667 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIMK1P53667 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMK1P53667 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
LIMK1P53667 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIMK1P53667 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMK1P53667 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIMK1P53667 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIMK1P53667 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.93■□□□□ 0.3
LIMK1P53667 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMK1P53667 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIMK1P53667 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.93■□□□□ 0.3
LIMK1P53667 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.93■□□□□ 0.3
LIMK1P53667 KRT18P32-201ENST00000424695 1287 ntBASIC16.93■□□□□ 0.3
LIMK1P53667 AL592309.1-201ENST00000443127 649 ntBASIC16.93■□□□□ 0.3
LIMK1P53667 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.93■□□□□ 0.3
LIMK1P53667 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
LIMK1P53667 KRT8P48-201ENST00000515599 1220 ntBASIC16.93■□□□□ 0.3
LIMK1P53667 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
LIMK1P53667 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
LIMK1P53667 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMK1P53667 AC097637.2-201ENST00000624096 1997 ntBASIC16.93■□□□□ 0.3
LIMK1P53667 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMK1P53667 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIMK1P53667 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIMK1P53667 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
LIMK1P53667 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMK1P53667 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMK1P53667 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMK1P53667 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms