Protein–RNA interactions for Protein: P51532

SMARCA4, Transcription activator BRG1, humanhuman

Predictions only

Length 1,647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4P51532 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
SMARCA4P51532 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
SMARCA4P51532 INE1-201ENST00000456273 945 ntBASIC30.29■■■□□ 2.44
SMARCA4P51532 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
SMARCA4P51532 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC30.29■■■□□ 2.44
SMARCA4P51532 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
SMARCA4P51532 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SMARCA4P51532 SLC9A3P2-201ENST00000447821 2021 ntBASIC30.28■■■□□ 2.44
SMARCA4P51532 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SMARCA4P51532 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC30.28■■■□□ 2.44
SMARCA4P51532 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SMARCA4P51532 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SMARCA4P51532 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SMARCA4P51532 AL353705.2-201ENST00000428243 662 ntBASIC30.28■■■□□ 2.44
SMARCA4P51532 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC30.28■■■□□ 2.44
SMARCA4P51532 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC30.28■■■□□ 2.44
SMARCA4P51532 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC30.28■■■□□ 2.44
SMARCA4P51532 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC30.28■■■□□ 2.44
SMARCA4P51532 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SMARCA4P51532 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SMARCA4P51532 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC30.28■■■□□ 2.44
SMARCA4P51532 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC30.28■■■□□ 2.44
SMARCA4P51532 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC30.27■■■□□ 2.44
SMARCA4P51532 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC30.27■■■□□ 2.44
SMARCA4P51532 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC30.27■■■□□ 2.44
SMARCA4P51532 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC30.27■■■□□ 2.44
SMARCA4P51532 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC30.27■■■□□ 2.44
SMARCA4P51532 MPDU1-223ENST00000582151 728 ntBASIC30.27■■■□□ 2.44
SMARCA4P51532 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
SMARCA4P51532 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC30.27■■■□□ 2.44
SMARCA4P51532 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC30.27■■■□□ 2.44
SMARCA4P51532 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
SMARCA4P51532 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
SMARCA4P51532 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC30.27■■■□□ 2.44
SMARCA4P51532 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC30.26■■■□□ 2.44
SMARCA4P51532 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC30.26■■■□□ 2.44
SMARCA4P51532 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC30.26■■■□□ 2.44
SMARCA4P51532 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC30.26■■■□□ 2.44
SMARCA4P51532 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC30.26■■■□□ 2.44
SMARCA4P51532 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC30.26■■■□□ 2.44
SMARCA4P51532 DFFBP1-201ENST00000433250 979 ntBASIC30.26■■■□□ 2.44
SMARCA4P51532 AC119751.2-201ENST00000504529 210 ntBASIC30.26■■■□□ 2.44
SMARCA4P51532 AL512361.1-201ENST00000554200 418 ntBASIC30.26■■■□□ 2.44
SMARCA4P51532 LITAF-210ENST00000571976 548 ntTSL 2 BASIC30.26■■■□□ 2.44
SMARCA4P51532 LITAF-214ENST00000574703 486 ntTSL 2 BASIC30.26■■■□□ 2.44
SMARCA4P51532 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC30.26■■■□□ 2.44
SMARCA4P51532 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.44
SMARCA4P51532 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC30.26■■■□□ 2.44
SMARCA4P51532 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
SMARCA4P51532 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC30.26■■■□□ 2.44
SMARCA4P51532 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
SMARCA4P51532 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC30.26■■■□□ 2.43
SMARCA4P51532 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
SMARCA4P51532 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
SMARCA4P51532 AP000974.1-201ENST00000623909 2387 ntBASIC30.26■■■□□ 2.43
SMARCA4P51532 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
SMARCA4P51532 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC30.26■■■□□ 2.43
SMARCA4P51532 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC30.25■■■□□ 2.43
SMARCA4P51532 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC30.25■■■□□ 2.43
SMARCA4P51532 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC30.25■■■□□ 2.43
SMARCA4P51532 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
SMARCA4P51532 AC132938.2-201ENST00000579188 680 ntBASIC30.25■■■□□ 2.43
SMARCA4P51532 AC017083.2-201ENST00000608069 979 ntBASIC30.25■■■□□ 2.43
SMARCA4P51532 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC30.25■■■□□ 2.43
SMARCA4P51532 AL591163.1-201ENST00000641757 987 ntBASIC30.25■■■□□ 2.43
SMARCA4P51532 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC30.25■■■□□ 2.43
SMARCA4P51532 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC30.25■■■□□ 2.43
SMARCA4P51532 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
SMARCA4P51532 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC30.25■■■□□ 2.43
SMARCA4P51532 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC30.25■■■□□ 2.43
SMARCA4P51532 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
SMARCA4P51532 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC30.25■■■□□ 2.43
SMARCA4P51532 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
SMARCA4P51532 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
SMARCA4P51532 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
SMARCA4P51532 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
SMARCA4P51532 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC30.25■■■□□ 2.43
SMARCA4P51532 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SMARCA4P51532 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC30.24■■■□□ 2.43
SMARCA4P51532 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SMARCA4P51532 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC30.24■■■□□ 2.43
SMARCA4P51532 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC30.24■■■□□ 2.43
SMARCA4P51532 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SMARCA4P51532 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
SMARCA4P51532 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
SMARCA4P51532 KRT18P34-201ENST00000488218 1270 ntBASIC30.24■■■□□ 2.43
SMARCA4P51532 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC30.24■■■□□ 2.43
SMARCA4P51532 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC30.24■■■□□ 2.43
SMARCA4P51532 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC30.24■■■□□ 2.43
SMARCA4P51532 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC30.24■■■□□ 2.43
SMARCA4P51532 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC30.24■■■□□ 2.43
SMARCA4P51532 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC30.24■■■□□ 2.43
SMARCA4P51532 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
SMARCA4P51532 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SMARCA4P51532 KRT8P49-201ENST00000604166 1432 ntBASIC30.24■■■□□ 2.43
SMARCA4P51532 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SMARCA4P51532 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
SMARCA4P51532 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC30.23■■■□□ 2.43
SMARCA4P51532 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
SMARCA4P51532 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC30.23■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms