Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC14.98□□□□□ -0.01
COL8A1P27658 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 AC100803.2-201ENST00000562459 1963 ntBASIC14.98□□□□□ -0.01
COL8A1P27658 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC14.98□□□□□ -0.01
COL8A1P27658 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 COBL-210ENST00000632460 1941 ntTSL 5 BASIC14.98□□□□□ -0.01
COL8A1P27658 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC14.97□□□□□ -0.01
COL8A1P27658 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL8A1P27658 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC14.97□□□□□ -0.01
COL8A1P27658 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.97□□□□□ -0.01
COL8A1P27658 AC026471.1-201ENST00000564629 3026 ntBASIC14.97□□□□□ -0.01
COL8A1P27658 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL8A1P27658 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL8A1P27658 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL8A1P27658 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.97□□□□□ -0.01
COL8A1P27658 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL8A1P27658 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL8A1P27658 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
COL8A1P27658 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL8A1P27658 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.97□□□□□ -0.01
COL8A1P27658 AC241585.1-201ENST00000433527 519 ntBASIC14.97□□□□□ -0.01
COL8A1P27658 AC140658.5-201ENST00000438532 169 ntBASIC14.97□□□□□ -0.01
COL8A1P27658 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC14.97□□□□□ -0.01
COL8A1P27658 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC14.97□□□□□ -0.01
COL8A1P27658 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC14.97□□□□□ -0.01
COL8A1P27658 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL8A1P27658 STK25P1-201ENST00000585406 838 ntBASIC14.97□□□□□ -0.01
COL8A1P27658 AL132655.2-201ENST00000596276 594 ntBASIC14.97□□□□□ -0.01
COL8A1P27658 AC116407.2-201ENST00000613639 860 ntBASIC14.97□□□□□ -0.01
COL8A1P27658 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.97□□□□□ -0.01
COL8A1P27658 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL8A1P27658 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
COL8A1P27658 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC14.97□□□□□ -0.01
COL8A1P27658 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
COL8A1P27658 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL8A1P27658 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL8A1P27658 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL8A1P27658 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL8A1P27658 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL8A1P27658 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC14.97□□□□□ -0.01
COL8A1P27658 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL8A1P27658 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL8A1P27658 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC14.96□□□□□ -0.01
COL8A1P27658 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL8A1P27658 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL8A1P27658 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL8A1P27658 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
COL8A1P27658 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC14.96□□□□□ -0.01
COL8A1P27658 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL8A1P27658 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.01
COL8A1P27658 ESPNP-201ENST00000270691 2015 ntBASIC14.96□□□□□ -0.01
COL8A1P27658 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL8A1P27658 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
COL8A1P27658 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC14.96□□□□□ -0.01
COL8A1P27658 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC14.96□□□□□ -0.01
COL8A1P27658 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.96□□□□□ -0.01
COL8A1P27658 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
COL8A1P27658 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC14.96□□□□□ -0.01
COL8A1P27658 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.96□□□□□ -0.01
COL8A1P27658 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.96□□□□□ -0.01
COL8A1P27658 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.96□□□□□ -0.01
COL8A1P27658 AC017083.2-201ENST00000608069 979 ntBASIC14.96□□□□□ -0.01
COL8A1P27658 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL8A1P27658 AC009118.2-201ENST00000613275 655 ntBASIC14.96□□□□□ -0.01
COL8A1P27658 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL8A1P27658 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL8A1P27658 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL8A1P27658 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL8A1P27658 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL8A1P27658 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL8A1P27658 USP39-202ENST00000409025 1946 ntTSL 5 BASIC14.96□□□□□ -0.02
COL8A1P27658 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
COL8A1P27658 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC14.96□□□□□ -0.02
COL8A1P27658 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL8A1P27658 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL8A1P27658 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC14.95□□□□□ -0.02
COL8A1P27658 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL8A1P27658 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
COL8A1P27658 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
COL8A1P27658 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL8A1P27658 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL8A1P27658 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
COL8A1P27658 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
COL8A1P27658 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL8A1P27658 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL8A1P27658 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL8A1P27658 MIR1909-201ENST00000411312 80 ntBASIC14.95□□□□□ -0.02
COL8A1P27658 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC14.95□□□□□ -0.02
COL8A1P27658 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL8A1P27658 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC14.95□□□□□ -0.02
COL8A1P27658 RARRES2P8-201ENST00000566335 367 ntBASIC14.95□□□□□ -0.02
COL8A1P27658 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
COL8A1P27658 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL8A1P27658 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL8A1P27658 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC14.95□□□□□ -0.02
COL8A1P27658 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms