Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL5A3P25940 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL5A3P25940 HLA-H-201ENST00000383620 1096 ntBASIC21.35■■□□□ 1.01
COL5A3P25940 HLA-V-201ENST00000429037 534 ntBASIC21.35■■□□□ 1.01
COL5A3P25940 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC21.35■■□□□ 1.01
COL5A3P25940 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
COL5A3P25940 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL5A3P25940 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC21.35■■□□□ 1.01
COL5A3P25940 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
COL5A3P25940 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL5A3P25940 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL5A3P25940 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC21.35■■□□□ 1.01
COL5A3P25940 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL5A3P25940 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL5A3P25940 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
COL5A3P25940 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL5A3P25940 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
COL5A3P25940 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC21.34■■□□□ 1.01
COL5A3P25940 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
COL5A3P25940 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL5A3P25940 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC21.34■■□□□ 1.01
COL5A3P25940 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL5A3P25940 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC21.34■■□□□ 1.01
COL5A3P25940 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL5A3P25940 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL5A3P25940 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC21.34■■□□□ 1.01
COL5A3P25940 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC21.34■■□□□ 1.01
COL5A3P25940 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC21.34■■□□□ 1.01
COL5A3P25940 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL5A3P25940 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC21.34■■□□□ 1.01
COL5A3P25940 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL5A3P25940 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL5A3P25940 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC21.34■■□□□ 1.01
COL5A3P25940 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC21.34■■□□□ 1.01
COL5A3P25940 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL5A3P25940 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC21.34■■□□□ 1.01
COL5A3P25940 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC21.34■■□□□ 1.01
COL5A3P25940 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC21.34■■□□□ 1.01
COL5A3P25940 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL5A3P25940 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC21.34■■□□□ 1.01
COL5A3P25940 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL5A3P25940 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC21.34■■□□□ 1.01
COL5A3P25940 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL5A3P25940 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC21.34■■□□□ 1.01
COL5A3P25940 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL5A3P25940 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL5A3P25940 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL5A3P25940 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL5A3P25940 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COL5A3P25940 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL5A3P25940 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
COL5A3P25940 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
COL5A3P25940 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
COL5A3P25940 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
COL5A3P25940 ZNF890P-202ENST00000530367 1156 ntBASIC21.33■■□□□ 1.01
COL5A3P25940 API5-211ENST00000534695 560 ntTSL 5 BASIC21.33■■□□□ 1.01
COL5A3P25940 STOM-203ENST00000538954 1257 ntTSL 5 BASIC21.33■■□□□ 1.01
COL5A3P25940 RNA5-8SN1-201ENST00000610460 153 ntBASIC21.33■■□□□ 1.01
COL5A3P25940 RNA5-8SN5-202ENST00000612463 153 ntBASIC21.33■■□□□ 1.01
COL5A3P25940 RNA5-8SN4-201ENST00000613359 153 ntBASIC21.33■■□□□ 1.01
COL5A3P25940 RNA5-8SN5-201ENST00000619471 153 ntBASIC21.33■■□□□ 1.01
COL5A3P25940 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC21.33■■□□□ 1.01
COL5A3P25940 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC21.33■■□□□ 1.01
COL5A3P25940 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL5A3P25940 SLC9A3P2-201ENST00000447821 2021 ntBASIC21.33■■□□□ 1
COL5A3P25940 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL5A3P25940 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
COL5A3P25940 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
COL5A3P25940 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
COL5A3P25940 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.33■■□□□ 1
COL5A3P25940 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.33■■□□□ 1
COL5A3P25940 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC21.32■■□□□ 1
COL5A3P25940 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL5A3P25940 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC21.32■■□□□ 1
COL5A3P25940 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL5A3P25940 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC21.32■■□□□ 1
COL5A3P25940 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC21.32■■□□□ 1
COL5A3P25940 HLA-V-204ENST00000476601 1289 ntBASIC21.32■■□□□ 1
COL5A3P25940 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC21.32■■□□□ 1
COL5A3P25940 AC004233.3-201ENST00000607794 1269 ntBASIC21.32■■□□□ 1
COL5A3P25940 AC021097.1-201ENST00000607902 574 ntBASIC21.32■■□□□ 1
COL5A3P25940 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC21.32■■□□□ 1
COL5A3P25940 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL5A3P25940 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL5A3P25940 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
COL5A3P25940 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC21.32■■□□□ 1
COL5A3P25940 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
COL5A3P25940 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
COL5A3P25940 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
COL5A3P25940 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL5A3P25940 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC21.32■■□□□ 1
COL5A3P25940 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL5A3P25940 NME2P1-201ENST00000426182 414 ntBASIC21.32■■□□□ 1
COL5A3P25940 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC21.32■■□□□ 1
COL5A3P25940 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC21.32■■□□□ 1
COL5A3P25940 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC21.32■■□□□ 1
COL5A3P25940 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC21.32■■□□□ 1
COL5A3P25940 AL133215.2-201ENST00000609242 977 ntBASIC21.32■■□□□ 1
COL5A3P25940 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC21.32■■□□□ 1
COL5A3P25940 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms