Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 OR7E14P-202ENST00000530490 1290 ntBASIC17.13■□□□□ 0.33
MSH3P20585 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.13■□□□□ 0.33
MSH3P20585 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.13■□□□□ 0.33
MSH3P20585 AC139887.3-201ENST00000568585 713 ntBASIC17.13■□□□□ 0.33
MSH3P20585 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.13■□□□□ 0.33
MSH3P20585 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.13■□□□□ 0.33
MSH3P20585 AL589182.2-201ENST00000619332 1049 ntBASIC17.13■□□□□ 0.33
MSH3P20585 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.13■□□□□ 0.33
MSH3P20585 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH3P20585 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH3P20585 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
MSH3P20585 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH3P20585 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH3P20585 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.13■□□□□ 0.33
MSH3P20585 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH3P20585 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH3P20585 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH3P20585 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSH3P20585 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH3P20585 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH3P20585 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH3P20585 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSH3P20585 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
MSH3P20585 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
MSH3P20585 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.12■□□□□ 0.33
MSH3P20585 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
MSH3P20585 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.12■□□□□ 0.33
MSH3P20585 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
MSH3P20585 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.12■□□□□ 0.33
MSH3P20585 AL121761.2-201ENST00000598007 1648 ntBASIC17.12■□□□□ 0.33
MSH3P20585 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 RPS2P28-201ENST00000314255 741 ntBASIC17.12■□□□□ 0.33
MSH3P20585 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.12■□□□□ 0.33
MSH3P20585 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
MSH3P20585 RPS2P1-201ENST00000434010 821 ntBASIC17.12■□□□□ 0.33
MSH3P20585 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.12■□□□□ 0.33
MSH3P20585 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.12■□□□□ 0.33
MSH3P20585 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.12■□□□□ 0.33
MSH3P20585 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.12■□□□□ 0.33
MSH3P20585 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.12■□□□□ 0.33
MSH3P20585 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.12■□□□□ 0.33
MSH3P20585 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
MSH3P20585 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH3P20585 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSH3P20585 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.11■□□□□ 0.33
MSH3P20585 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSH3P20585 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
MSH3P20585 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
MSH3P20585 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.11■□□□□ 0.33
MSH3P20585 PCDHA12-202ENST00000613593 2588 ntBASIC17.11■□□□□ 0.33
MSH3P20585 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSH3P20585 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSH3P20585 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
MSH3P20585 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
MSH3P20585 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
MSH3P20585 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.11■□□□□ 0.33
MSH3P20585 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.11■□□□□ 0.33
MSH3P20585 LAGE3P1-201ENST00000425356 484 ntBASIC17.11■□□□□ 0.33
MSH3P20585 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
MSH3P20585 AL662844.1-201ENST00000546340 181 ntBASIC17.11■□□□□ 0.33
MSH3P20585 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.11■□□□□ 0.33
MSH3P20585 AL773604.1-201ENST00000617417 272 ntBASIC17.11■□□□□ 0.33
MSH3P20585 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
MSH3P20585 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSH3P20585 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.11■□□□□ 0.33
MSH3P20585 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSH3P20585 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
MSH3P20585 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSH3P20585 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
MSH3P20585 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MSH3P20585 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
MSH3P20585 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSH3P20585 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.11■□□□□ 0.33
MSH3P20585 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH3P20585 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MSH3P20585 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH3P20585 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms