Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.1■□□□□ 0.33
PDGFBP01127 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFBP01127 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFBP01127 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFBP01127 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFBP01127 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFBP01127 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC17.1■□□□□ 0.33
PDGFBP01127 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFBP01127 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.1■□□□□ 0.33
PDGFBP01127 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PDGFBP01127 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC17.1■□□□□ 0.33
PDGFBP01127 PARP8-218ENST00000513738 596 ntTSL 4 BASIC17.1■□□□□ 0.33
PDGFBP01127 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.1■□□□□ 0.33
PDGFBP01127 FAM8A2P-201ENST00000528813 1142 ntBASIC17.1■□□□□ 0.33
PDGFBP01127 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFBP01127 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC17.1■□□□□ 0.33
PDGFBP01127 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17.1■□□□□ 0.33
PDGFBP01127 AC004790.1-201ENST00000612686 536 ntBASIC17.1■□□□□ 0.33
PDGFBP01127 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.1■□□□□ 0.33
PDGFBP01127 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFBP01127 AC087499.5-201ENST00000452760 1342 ntBASIC17.1■□□□□ 0.33
PDGFBP01127 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFBP01127 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
PDGFBP01127 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PDGFBP01127 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.1■□□□□ 0.33
PDGFBP01127 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
PDGFBP01127 AC120498.9-201ENST00000339021 3867 ntBASIC17.1■□□□□ 0.33
PDGFBP01127 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.1■□□□□ 0.33
PDGFBP01127 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
PDGFBP01127 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFBP01127 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFBP01127 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFBP01127 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFBP01127 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFBP01127 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.09■□□□□ 0.33
PDGFBP01127 AP000997.3-201ENST00000623333 2250 ntBASIC17.09■□□□□ 0.33
PDGFBP01127 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFBP01127 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
PDGFBP01127 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFBP01127 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFBP01127 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
PDGFBP01127 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC17.09■□□□□ 0.33
PDGFBP01127 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.09■□□□□ 0.33
PDGFBP01127 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PDGFBP01127 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.09■□□□□ 0.33
PDGFBP01127 AC011495.1-201ENST00000498085 584 ntBASIC17.09■□□□□ 0.33
PDGFBP01127 AC135586.1-201ENST00000539323 574 ntBASIC17.09■□□□□ 0.33
PDGFBP01127 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC17.09■□□□□ 0.33
PDGFBP01127 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC17.09■□□□□ 0.33
PDGFBP01127 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC17.09■□□□□ 0.33
PDGFBP01127 AL512343.1-201ENST00000605837 169 ntBASIC17.09■□□□□ 0.33
PDGFBP01127 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
PDGFBP01127 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.09■□□□□ 0.33
PDGFBP01127 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFBP01127 AL133338.1-201ENST00000565695 1517 ntBASIC17.09■□□□□ 0.33
PDGFBP01127 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFBP01127 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.09■□□□□ 0.33
PDGFBP01127 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFBP01127 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.09■□□□□ 0.33
PDGFBP01127 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFBP01127 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFBP01127 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PDGFBP01127 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PDGFBP01127 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
PDGFBP01127 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
PDGFBP01127 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PDGFBP01127 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.08■□□□□ 0.33
PDGFBP01127 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.08■□□□□ 0.33
PDGFBP01127 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.08■□□□□ 0.32
PDGFBP01127 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PDGFBP01127 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
PDGFBP01127 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
PDGFBP01127 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC17.08■□□□□ 0.32
PDGFBP01127 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC17.08■□□□□ 0.32
PDGFBP01127 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC17.08■□□□□ 0.32
PDGFBP01127 RPL37AP1-201ENST00000412502 279 ntBASIC17.08■□□□□ 0.32
PDGFBP01127 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.08■□□□□ 0.32
PDGFBP01127 DFFBP1-201ENST00000433250 979 ntBASIC17.08■□□□□ 0.32
PDGFBP01127 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.08■□□□□ 0.32
PDGFBP01127 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC17.08■□□□□ 0.32
PDGFBP01127 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.08■□□□□ 0.32
PDGFBP01127 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.08■□□□□ 0.32
PDGFBP01127 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.08■□□□□ 0.32
PDGFBP01127 MIR4538-201ENST00000581377 78 ntBASIC17.08■□□□□ 0.32
PDGFBP01127 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.32
PDGFBP01127 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.08■□□□□ 0.32
PDGFBP01127 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.08■□□□□ 0.32
PDGFBP01127 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PDGFBP01127 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
PDGFBP01127 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.08■□□□□ 0.32
PDGFBP01127 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.08■□□□□ 0.32
PDGFBP01127 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.08■□□□□ 0.32
PDGFBP01127 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.08■□□□□ 0.32
PDGFBP01127 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PDGFBP01127 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PDGFBP01127 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PDGFBP01127 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PDGFBP01127 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
PDGFBP01127 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDGFBP01127 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms