Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.42■□□□□ 0.38
HOXC11O43248 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.42■□□□□ 0.38
HOXC11O43248 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.42■□□□□ 0.38
HOXC11O43248 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.42■□□□□ 0.38
HOXC11O43248 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.42■□□□□ 0.38
HOXC11O43248 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.42■□□□□ 0.38
HOXC11O43248 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.42■□□□□ 0.38
HOXC11O43248 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
HOXC11O43248 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.42■□□□□ 0.38
HOXC11O43248 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.42■□□□□ 0.38
HOXC11O43248 AC099522.2-201ENST00000607001 744 ntBASIC17.42■□□□□ 0.38
HOXC11O43248 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.42■□□□□ 0.38
HOXC11O43248 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC11O43248 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
HOXC11O43248 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
HOXC11O43248 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
HOXC11O43248 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC11O43248 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
HOXC11O43248 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC11O43248 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC11O43248 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC11O43248 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC11O43248 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.42■□□□□ 0.38
HOXC11O43248 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC11O43248 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.42■□□□□ 0.38
HOXC11O43248 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.42■□□□□ 0.38
HOXC11O43248 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC11O43248 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.41■□□□□ 0.38
HOXC11O43248 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC11O43248 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
HOXC11O43248 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.41■□□□□ 0.38
HOXC11O43248 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
HOXC11O43248 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC11O43248 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.41■□□□□ 0.38
HOXC11O43248 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC11O43248 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC11O43248 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC11O43248 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC11O43248 TSEN15P1-201ENST00000423257 515 ntBASIC17.41■□□□□ 0.38
HOXC11O43248 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC11O43248 AL645939.2-201ENST00000427340 991 ntBASIC17.41■□□□□ 0.38
HOXC11O43248 CYMP-203ENST00000474680 1263 ntBASIC17.41■□□□□ 0.38
HOXC11O43248 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.41■□□□□ 0.38
HOXC11O43248 FAM86C2P-203ENST00000528684 1004 ntBASIC17.41■□□□□ 0.38
HOXC11O43248 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.41■□□□□ 0.38
HOXC11O43248 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC11O43248 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
HOXC11O43248 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.41■□□□□ 0.38
HOXC11O43248 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC11O43248 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC11O43248 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
HOXC11O43248 GOLGA6L17P-202ENST00000614358 1398 ntBASIC17.4■□□□□ 0.38
HOXC11O43248 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC11O43248 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC11O43248 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
HOXC11O43248 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC11O43248 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC11O43248 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC11O43248 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
HOXC11O43248 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC11O43248 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC11O43248 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC11O43248 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC11O43248 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
HOXC11O43248 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
HOXC11O43248 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
HOXC11O43248 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC11O43248 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC11O43248 SLC25A1P3-201ENST00000395415 828 ntBASIC17.4■□□□□ 0.38
HOXC11O43248 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.4■□□□□ 0.38
HOXC11O43248 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.4■□□□□ 0.38
HOXC11O43248 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.4■□□□□ 0.38
HOXC11O43248 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.4■□□□□ 0.38
HOXC11O43248 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.4■□□□□ 0.38
HOXC11O43248 AC099398.1-201ENST00000567919 2776 ntBASIC17.4■□□□□ 0.38
HOXC11O43248 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
HOXC11O43248 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
HOXC11O43248 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.4■□□□□ 0.38
HOXC11O43248 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC11O43248 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC11O43248 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.4■□□□□ 0.38
HOXC11O43248 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC11O43248 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.4■□□□□ 0.38
HOXC11O43248 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
HOXC11O43248 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.4■□□□□ 0.38
HOXC11O43248 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC11O43248 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.39■□□□□ 0.38
HOXC11O43248 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
HOXC11O43248 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
HOXC11O43248 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
HOXC11O43248 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
HOXC11O43248 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC11O43248 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC11O43248 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
HOXC11O43248 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC11O43248 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
HOXC11O43248 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC11O43248 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC11O43248 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
HOXC11O43248 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms