Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 HCG11-201ENST00000411553 5696 ntBASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 FALEC-201ENST00000416894 566 ntTSL 3 BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 AP001160.2-201ENST00000596071 487 ntBASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 HARS-203ENST00000431330 1774 ntTSL 2 BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 AC092919.2-201ENST00000623631 1645 ntBASIC18.34■□□□□ 0.53
SMIM28A0A1B0GU29 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SMIM28A0A1B0GU29 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.53
SMIM28A0A1B0GU29 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.33■□□□□ 0.53
SMIM28A0A1B0GU29 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SMIM28A0A1B0GU29 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SMIM28A0A1B0GU29 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
SMIM28A0A1B0GU29 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SMIM28A0A1B0GU29 ELL2P1-201ENST00000413990 1906 ntBASIC18.33■□□□□ 0.53
SMIM28A0A1B0GU29 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SMIM28A0A1B0GU29 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
SMIM28A0A1B0GU29 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SMIM28A0A1B0GU29 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SMIM28A0A1B0GU29 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SMIM28A0A1B0GU29 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SMIM28A0A1B0GU29 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SMIM28A0A1B0GU29 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
SMIM28A0A1B0GU29 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SMIM28A0A1B0GU29 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 FAM58CP-201ENST00000435741 640 ntBASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 AC092183.1-201ENST00000469884 875 ntBASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 DUX4L17-201ENST00000557360 1267 ntBASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 AL031432.2-201ENST00000566714 459 ntBASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 AL928711.1-201ENST00000570165 459 ntBASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 AP002472.1-201ENST00000577490 586 ntBASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 AC068137.2-201ENST00000605408 478 ntBASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMIM28A0A1B0GU29 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 AP006288.1-201ENST00000446065 395 ntBASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 AC005412.3-201ENST00000580309 715 ntBASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 MIR4515-201ENST00000584082 81 ntBASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMIM28A0A1B0GU29 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms