Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNX9Q9Y5X1 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNX9Q9Y5X1 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
SNX9Q9Y5X1 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNX9Q9Y5X1 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNX9Q9Y5X1 AC116353.5-201ENST00000638148 1699 ntBASIC18.41■□□□□ 0.54
SNX9Q9Y5X1 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNX9Q9Y5X1 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNX9Q9Y5X1 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
SNX9Q9Y5X1 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 SLC25A1P3-201ENST00000395415 828 ntBASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 PMS2P1-201ENST00000431037 1228 ntBASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 MIR4751-201ENST00000578027 74 ntBASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
SNX9Q9Y5X1 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SNX9Q9Y5X1 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SNX9Q9Y5X1 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
SNX9Q9Y5X1 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.54
SNX9Q9Y5X1 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.39■□□□□ 0.54
SNX9Q9Y5X1 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SNX9Q9Y5X1 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 AC007967.2-201ENST00000432613 625 ntBASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 POLD2P1-201ENST00000511220 997 ntBASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 KRT18P58-201ENST00000527480 1120 ntBASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 GGTLC5P-201ENST00000617623 998 ntBASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNX9Q9Y5X1 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SNX9Q9Y5X1 EGFEM1P-202ENST00000431685 1563 ntBASIC18.38■□□□□ 0.53
SNX9Q9Y5X1 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
SNX9Q9Y5X1 AC106820.2-201ENST00000563775 3264 ntBASIC18.38■□□□□ 0.53
SNX9Q9Y5X1 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.38■□□□□ 0.53
SNX9Q9Y5X1 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
SNX9Q9Y5X1 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SNX9Q9Y5X1 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SNX9Q9Y5X1 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNX9Q9Y5X1 MED15P5-201ENST00000423150 992 ntBASIC18.38■□□□□ 0.53
SNX9Q9Y5X1 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SNX9Q9Y5X1 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.38■□□□□ 0.53
SNX9Q9Y5X1 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.38■□□□□ 0.53
SNX9Q9Y5X1 AC140113.2-201ENST00000604370 208 ntBASIC18.38■□□□□ 0.53
SNX9Q9Y5X1 AC027601.4-201ENST00000611259 610 ntBASIC18.38■□□□□ 0.53
SNX9Q9Y5X1 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.38■□□□□ 0.53
SNX9Q9Y5X1 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNX9Q9Y5X1 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.38■□□□□ 0.53
SNX9Q9Y5X1 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.38■□□□□ 0.53
SNX9Q9Y5X1 AC139713.2-201ENST00000641328 2723 ntBASIC18.38■□□□□ 0.53
SNX9Q9Y5X1 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms