Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC32.48■■■□□ 2.79
SHROOM4Q9ULL8 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC32.48■■■□□ 2.79
SHROOM4Q9ULL8 SPDYE14P-201ENST00000442619 822 ntBASIC32.48■■■□□ 2.79
SHROOM4Q9ULL8 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC32.48■■■□□ 2.79
SHROOM4Q9ULL8 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
SHROOM4Q9ULL8 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC32.48■■■□□ 2.79
SHROOM4Q9ULL8 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC32.48■■■□□ 2.79
SHROOM4Q9ULL8 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC32.48■■■□□ 2.79
SHROOM4Q9ULL8 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
SHROOM4Q9ULL8 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
SHROOM4Q9ULL8 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC32.48■■■□□ 2.79
SHROOM4Q9ULL8 TREML5P-201ENST00000421694 576 ntBASIC32.48■■■□□ 2.79
SHROOM4Q9ULL8 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC32.48■■■□□ 2.79
SHROOM4Q9ULL8 FAM58DP-201ENST00000428076 619 ntBASIC32.48■■■□□ 2.79
SHROOM4Q9ULL8 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC32.48■■■□□ 2.79
SHROOM4Q9ULL8 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
SHROOM4Q9ULL8 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC32.48■■■□□ 2.79
SHROOM4Q9ULL8 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC32.48■■■□□ 2.79
SHROOM4Q9ULL8 CYP51A1P2-201ENST00000419457 1499 ntBASIC32.47■■■□□ 2.79
SHROOM4Q9ULL8 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC32.47■■■□□ 2.79
SHROOM4Q9ULL8 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC32.47■■■□□ 2.79
SHROOM4Q9ULL8 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC32.47■■■□□ 2.79
SHROOM4Q9ULL8 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC32.47■■■□□ 2.79
SHROOM4Q9ULL8 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC32.47■■■□□ 2.79
SHROOM4Q9ULL8 HNRNPA1P40-201ENST00000426371 1278 ntBASIC32.47■■■□□ 2.79
SHROOM4Q9ULL8 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC32.47■■■□□ 2.79
SHROOM4Q9ULL8 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC32.47■■■□□ 2.79
SHROOM4Q9ULL8 AL135744.1-201ENST00000565098 629 ntBASIC32.47■■■□□ 2.79
SHROOM4Q9ULL8 AC027307.3-201ENST00000594262 1100 ntBASIC32.47■■■□□ 2.79
SHROOM4Q9ULL8 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC32.47■■■□□ 2.79
SHROOM4Q9ULL8 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC32.47■■■□□ 2.79
SHROOM4Q9ULL8 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC32.47■■■□□ 2.79
SHROOM4Q9ULL8 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC32.46■■■□□ 2.79
SHROOM4Q9ULL8 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
SHROOM4Q9ULL8 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
SHROOM4Q9ULL8 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
SHROOM4Q9ULL8 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC32.46■■■□□ 2.79
SHROOM4Q9ULL8 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC32.46■■■□□ 2.79
SHROOM4Q9ULL8 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC32.46■■■□□ 2.79
SHROOM4Q9ULL8 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC32.46■■■□□ 2.79
SHROOM4Q9ULL8 RN7SL692P-201ENST00000464677 288 ntBASIC32.46■■■□□ 2.79
SHROOM4Q9ULL8 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC32.46■■■□□ 2.79
SHROOM4Q9ULL8 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
SHROOM4Q9ULL8 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC32.46■■■□□ 2.79
SHROOM4Q9ULL8 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC32.46■■■□□ 2.79
SHROOM4Q9ULL8 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC32.46■■■□□ 2.79
SHROOM4Q9ULL8 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC32.46■■■□□ 2.79
SHROOM4Q9ULL8 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC32.46■■■□□ 2.79
SHROOM4Q9ULL8 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC32.46■■■□□ 2.79
SHROOM4Q9ULL8 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC32.45■■■□□ 2.79
SHROOM4Q9ULL8 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
SHROOM4Q9ULL8 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC32.45■■■□□ 2.79
SHROOM4Q9ULL8 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC32.45■■■□□ 2.79
SHROOM4Q9ULL8 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC32.45■■■□□ 2.79
SHROOM4Q9ULL8 AL596325.1-201ENST00000563991 1082 ntBASIC32.45■■■□□ 2.79
SHROOM4Q9ULL8 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC32.45■■■□□ 2.79
SHROOM4Q9ULL8 AKAP8P1-201ENST00000434743 1349 ntBASIC32.45■■■□□ 2.78
SHROOM4Q9ULL8 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.78
SHROOM4Q9ULL8 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC32.45■■■□□ 2.78
SHROOM4Q9ULL8 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC32.45■■■□□ 2.78
SHROOM4Q9ULL8 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC32.45■■■□□ 2.78
SHROOM4Q9ULL8 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC32.44■■■□□ 2.78
SHROOM4Q9ULL8 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
SHROOM4Q9ULL8 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC32.44■■■□□ 2.78
SHROOM4Q9ULL8 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
SHROOM4Q9ULL8 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC32.44■■■□□ 2.78
SHROOM4Q9ULL8 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC32.44■■■□□ 2.78
SHROOM4Q9ULL8 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC32.44■■■□□ 2.78
SHROOM4Q9ULL8 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC32.44■■■□□ 2.78
SHROOM4Q9ULL8 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
SHROOM4Q9ULL8 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
SHROOM4Q9ULL8 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC32.44■■■□□ 2.78
SHROOM4Q9ULL8 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
SHROOM4Q9ULL8 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
SHROOM4Q9ULL8 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
SHROOM4Q9ULL8 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC32.43■■■□□ 2.78
SHROOM4Q9ULL8 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
SHROOM4Q9ULL8 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC32.43■■■□□ 2.78
SHROOM4Q9ULL8 NME2P1-201ENST00000426182 414 ntBASIC32.43■■■□□ 2.78
SHROOM4Q9ULL8 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC32.43■■■□□ 2.78
SHROOM4Q9ULL8 AC087163.2-201ENST00000457299 853 ntBASIC32.43■■■□□ 2.78
SHROOM4Q9ULL8 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC32.43■■■□□ 2.78
SHROOM4Q9ULL8 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC32.43■■■□□ 2.78
SHROOM4Q9ULL8 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
SHROOM4Q9ULL8 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
SHROOM4Q9ULL8 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC32.43■■■□□ 2.78
SHROOM4Q9ULL8 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC32.43■■■□□ 2.78
SHROOM4Q9ULL8 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC32.43■■■□□ 2.78
SHROOM4Q9ULL8 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC32.43■■■□□ 2.78
SHROOM4Q9ULL8 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 AC005237.2-201ENST00000434368 219 ntBASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 SRP9-204ENST00000619790 377 ntTSL 2 BASIC32.42■■■□□ 2.78
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms