Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 TUBB8P12-201ENST00000308911 1335 ntBASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 TUBB7P-202ENST00000428444 1305 ntBASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 TUBB8P7-204ENST00000567960 1332 ntBASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 AP002490.2-201ENST00000524791 560 ntBASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 AL121956.5-201ENST00000625261 221 ntBASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 AC233702.3-201ENST00000578656 1387 ntBASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
LIMA1Q9UHB6 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 NUS1P1-201ENST00000446295 882 ntBASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMA1Q9UHB6 AL391256.1-201ENST00000443260 1855 ntBASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 AC005332.1-201ENST00000577698 1310 ntBASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 ACTG1P4-201ENST00000425123 1122 ntBASIC18.77■□□□□ 0.6
LIMA1Q9UHB6 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms