Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
DKK3Q9UBP4 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.28■□□□□ 0.36
DKK3Q9UBP4 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
DKK3Q9UBP4 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.28■□□□□ 0.36
DKK3Q9UBP4 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 PI4KAP1-204ENST00000612579 1703 ntBASIC17.27■□□□□ 0.36
DKK3Q9UBP4 PMS2P7-201ENST00000506558 1336 ntBASIC17.27■□□□□ 0.36
DKK3Q9UBP4 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 CRYGEP-201ENST00000412192 528 ntBASIC17.27■□□□□ 0.36
DKK3Q9UBP4 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 KRT18P3-201ENST00000451602 1288 ntBASIC17.27■□□□□ 0.36
DKK3Q9UBP4 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.27■□□□□ 0.36
DKK3Q9UBP4 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
DKK3Q9UBP4 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
DKK3Q9UBP4 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
DKK3Q9UBP4 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
DKK3Q9UBP4 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.27■□□□□ 0.35
DKK3Q9UBP4 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
DKK3Q9UBP4 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
DKK3Q9UBP4 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
DKK3Q9UBP4 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
DKK3Q9UBP4 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.27■□□□□ 0.35
DKK3Q9UBP4 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
DKK3Q9UBP4 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.27■□□□□ 0.35
DKK3Q9UBP4 AC139713.2-201ENST00000641328 2723 ntBASIC17.27■□□□□ 0.35
DKK3Q9UBP4 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.26■□□□□ 0.35
DKK3Q9UBP4 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 POLD2P1-201ENST00000511220 997 ntBASIC17.26■□□□□ 0.35
DKK3Q9UBP4 RNA5SP416-201ENST00000516838 111 ntBASIC17.26■□□□□ 0.35
DKK3Q9UBP4 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 MIR4751-201ENST00000578027 74 ntBASIC17.26■□□□□ 0.35
DKK3Q9UBP4 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.26■□□□□ 0.35
DKK3Q9UBP4 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
DKK3Q9UBP4 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
DKK3Q9UBP4 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
DKK3Q9UBP4 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
DKK3Q9UBP4 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
DKK3Q9UBP4 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
DKK3Q9UBP4 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
DKK3Q9UBP4 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
DKK3Q9UBP4 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
DKK3Q9UBP4 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.25■□□□□ 0.35
DKK3Q9UBP4 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
DKK3Q9UBP4 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
DKK3Q9UBP4 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
DKK3Q9UBP4 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
DKK3Q9UBP4 SLC25A1P3-201ENST00000395415 828 ntBASIC17.25■□□□□ 0.35
DKK3Q9UBP4 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
DKK3Q9UBP4 HCG4B-203ENST00000450128 991 ntBASIC17.25■□□□□ 0.35
DKK3Q9UBP4 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.25■□□□□ 0.35
DKK3Q9UBP4 PGAM5P1-201ENST00000518923 814 ntBASIC17.25■□□□□ 0.35
DKK3Q9UBP4 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.25■□□□□ 0.35
DKK3Q9UBP4 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.25■□□□□ 0.35
DKK3Q9UBP4 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
DKK3Q9UBP4 AC064836.3-201ENST00000607928 673 ntBASIC17.25■□□□□ 0.35
DKK3Q9UBP4 GPALPP1-207ENST00000611650 899 ntBASIC17.25■□□□□ 0.35
DKK3Q9UBP4 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms