Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TREX1Q9NSU2 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.14■□□□□ 0.33
TREX1Q9NSU2 AKR1C7P-201ENST00000305623 895 ntBASIC17.14■□□□□ 0.33
TREX1Q9NSU2 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TREX1Q9NSU2 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TREX1Q9NSU2 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TREX1Q9NSU2 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.14■□□□□ 0.33
TREX1Q9NSU2 AC091304.2-201ENST00000564639 760 ntBASIC17.14■□□□□ 0.33
TREX1Q9NSU2 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.14■□□□□ 0.33
TREX1Q9NSU2 PRELID1P1-202ENST00000567272 903 ntBASIC17.14■□□□□ 0.33
TREX1Q9NSU2 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TREX1Q9NSU2 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TREX1Q9NSU2 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
TREX1Q9NSU2 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.14■□□□□ 0.33
TREX1Q9NSU2 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.14■□□□□ 0.33
TREX1Q9NSU2 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
TREX1Q9NSU2 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.14■□□□□ 0.33
TREX1Q9NSU2 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
TREX1Q9NSU2 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 AC124067.4-201ENST00000519691 2379 ntBASIC17.13■□□□□ 0.33
TREX1Q9NSU2 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 SART3-203ENST00000546611 1184 ntBASIC17.13■□□□□ 0.33
TREX1Q9NSU2 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.13■□□□□ 0.33
TREX1Q9NSU2 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 AC008608.2-201ENST00000606089 416 ntBASIC17.12■□□□□ 0.33
TREX1Q9NSU2 AL589182.2-201ENST00000619332 1049 ntBASIC17.12■□□□□ 0.33
TREX1Q9NSU2 TUBB8P12-201ENST00000308911 1335 ntBASIC17.12■□□□□ 0.33
TREX1Q9NSU2 TUBB7P-202ENST00000428444 1305 ntBASIC17.12■□□□□ 0.33
TREX1Q9NSU2 TUBB8P7-204ENST00000567960 1332 ntBASIC17.12■□□□□ 0.33
TREX1Q9NSU2 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TREX1Q9NSU2 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms